add pandas to chopgo

Eco-Flow · Oct 25, 2024 · 116161f · 116161f
1 parent 4fac164
commit 116161f
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/.github/workflows/push-chopgo.yml b/.github/workflows/push-chopgo.yml
@@ -6,7 +6,7 @@ on:
 #When updating images change image tag below to correspond to changes
 env:
   IMAGE_NAME: chopgo
-  IMAGE_TAG: r-4.3.2_python-3_perl-5.38
+  IMAGE_TAG: r-4.3.2_python-3.10_perl-5.38_pandas
 
 jobs:
   build:

diff --git a/chopgo/Dockerfile b/chopgo/Dockerfile
@@ -1,7 +1,7 @@
 FROM rocker/r-base:4.3.1
 
 RUN apt-get update && \
-    apt-get install -y python3 wget procps libcurl4-openssl-dev libssl-dev perl && \
+    apt-get install -y python3 python3-pip python3-pandas wget procps libcurl4-openssl-dev libssl-dev perl && \
     apt-get clean -y && rm -rf /var/lib/apt/lists/*
 
 RUN Rscript -e "install.packages(c('BiocManager', 'devtools', 'dplyr', 'tidyr','readxl', 'writexls', 'plyr', 'gdata', 'pheatmap', 'ashr', 'ggplot2', 'ggstar', 'scatterpie', 'scales'))"