Add python

Eco-Flow · Oct 22, 2024 · f228591 · f228591
1 parent 26afc7a
commit f228591
Showing 1 changed file with 3 additions and 4 deletions.
diff --git a/genomeqc_tree/Dockerfile b/genomeqc_tree/Dockerfile
@@ -1,16 +1,15 @@
 FROM rocker/r-base:4.3.3
 
-# Install required system packages
+# Install required system packages including Python
 RUN apt-get update && \
-    apt-get install -y procps curl libxml2-dev libssl-dev libcurl4-openssl-dev && \
+    apt-get install -y procps curl libxml2-dev libssl-dev libcurl4-openssl-dev python3 python3-pip && \
     apt-get clean -y && rm -rf /var/lib/apt/lists/*
 
 # Install R packages and BiocManager
-RUN Rscript -e "install.packages(c('R.utils', 'BiocManager', 'dplyr', 'ggplot2', 'cowplot', 'argparse'))"
+RUN Rscript -e "install.packages(c('R.utils', 'BiocManager', 'dplyr', 'ggplot2', 'cowplot'))"
 
 # Install ggtree using BiocManager
 RUN Rscript -e "BiocManager::install('ggtree', update = TRUE, ask = FALSE)"
 
 # Set up default command
 CMD ["R"]
-