Merge pull request #76 from EdinburghGenomics/new_constants

New constant for interop metrics and non fr insert size

egcg_core/constants.py

@@ -49,6 +49,8 @@
 ELEMENT_MEDIAN_ABS_DEV_INSERT_SIZE = 'median_abs_dev_insert_size'
 ELEMENT_MEAN_INSERT_SIZE = 'mean_insert_size'
 ELEMENT_STD_DEV_INSERT_SIZE = 'std_dev_insert_size'
+ELEMENT_PC_INSERT_SIZE = 'pc_insert_size'
+ELEMENT_NON_FR_INSERTS = 'non_fr_inserts'
 ELEMENT_MEDIAN_COVERAGE = 'median_coverage'
 ELEMENT_SAMTOOLS_MEDIAN_COVERAGE = 'samtools_median_coverage'
 ELEMENT_PC_BASES_CALLABLE = 'pc_callable'
@@ -98,6 +100,29 @@
 ELEMENT_USEABLE_DATE = 'useable_date'
 ELEMENT_DELIVERED = 'delivered'
 ELEMENT_DELIVERY_DATE = 'delivery_date'
+ELEMENT_LANE_INTEROP = 'interop_metrics'
+ELEMENT_LANE_INT_C1_R1 = 'intensity_c1_r1'
+ELEMENT_LANE_INT_C1_R2 = 'intensity_c1_r2'
+ELEMENT_LANE_INT_C1_STDEV_R1 = 'intensity_c1_stdev_r1'
+ELEMENT_LANE_INT_C1_STDEV_R2 = 'intensity_c1_stdev_r2'
+ELEMENT_LANE_PC_ALIGNED_R1 = 'pc_aligned_r1'
+ELEMENT_LANE_PC_ALIGNED_R2 = 'pc_aligned_r2'
+ELEMENT_LANE_PC_ALIGNED_STDEV_R1 = 'pc_aligned_stdev_r1'
+ELEMENT_LANE_PC_ALIGNED_STDEV_R2 = 'pc_aligned_stdev_r2'
+ELEMENT_LANE_PC_PF_R1 = 'pc_clust_pf_r1'
+ELEMENT_LANE_PC_PF_R2 = 'pc_clust_pf_r2'
+ELEMENT_LANE_PC_PF_STDEV_R1 = 'pc_clust_pf_stdev_r1'
+ELEMENT_LANE_PC_PF_STDEV_R2 = 'pc_clust_pf_stdev_r2'
+ELEMENT_LANE_PC_ERR_R1 = 'pc_error_r1'
+ELEMENT_LANE_PC_ERR_R2 = 'pc_error_r2'
+ELEMENT_LANE_PC_ERR_STDEV_R1 = 'pc_error_stdev_r1'
+ELEMENT_LANE_PC_ERR_STDEV_R2 = 'pc_error_stdev_r2'
+ELEMENT_LANE_PC_Q30_R1 = 'pc_q30_r1'
+ELEMENT_LANE_PC_Q30_R2 = 'pc_q30_r2'
+ELEMENT_LANE_PHASING_R1 = 'phasing_r1'
+ELEMENT_LANE_PHASING_R2 = 'phasing_r2'
+ELEMENT_LANE_PREPHASING_R1 = 'prephasing_r1'
+ELEMENT_LANE_PREPHASING_R2 = 'prephasing_r2'
 
 ELEMENT_FASTQS_DELETED = 'input_fastqs_deleted'