v0.6.5

Fix get_project

v0.6.4

• executors now retry their job submissions upon failure, up to three times
• some log messages from notifications have been reduced to debug
• clarity.get_sample_gender now checks for a 'Sex' UDF before checking 'Gender'
• in rest_communication, the building of requests has been fixed, as below:

In Communicator.get_content, we used to build a url manually via api_url and pass it to _req. This was because we had to cast dicts to strings manually:

    where = {'this': 'that', 'other': None}
    cast_where = '{"this":"that","other":null}'

However, the removal of spaces that this involved meant that any query for a field containing a space resulted in a bad query:

    where = {'field_name': 'with spaces'}
    cast_where = '{"field_name":"withspaces"}'

To fix this, we now pass the query string through params, and do Json serialisation on any dict params:

    params = {'page': 1, where: {'this': 'that', 'other': None}}
    query_string = '?page=1&where={"this": "that", "other": null}'

v0.6.2

Emergency fix in move_dir where the destination file was named after the linked file instead of the link name

v0.6.1

Improve util and error handling
Add function to retrieve project from LIMS API

v0.6

This version adds the ability to cancel currently running cluster jobs in executor. Also fixes a bug in util.move_dir.

v0.5.1

Minor version adding evenness

v0.5

Executors have been fixed to process the output of sacct properly. Script writers have also been refactored/simplified.

v0.4.3

This version add the ability to Notify a log file, through email or over Asana tasks.
It also adds new constant and allow the Configuration object to still work even when no config file is passed

v0.4.1

This version fixes a bug in EnvConfiguration, where it wasn't selecting a new environment properly. Two fields have also been added to constants for upcoming versions of Analysis-Driver and Reporting-App.

v0.4

Bugs have been fixed in clarity, ncbi and rest_communication. There is also now a more flexible, object oriented rest_communication, where a Communicator object can be created with a base url and username-password or token authentication.