v0.13

• Clarity function uses the reporting app lims end point whenever possible.

v0.12

• Integration tests: Load data in integration tests
• Use a more generic exception to catch errors when emailling
• Rest_communication: Add Explicit retries
• Retrieval of default genome version now use the reporting app API
• In clarity script: Update delivery step name

v0.11.2

Changes:

• Compatibility with upcoming Asana API changes

v0.11.1

• Updating Jinja2 to 2.10.1
• Updating pyclarity_lims to 0.4.8

v0.11

• Make methods to access local NCBI database public
• Change constant name from gender to sex (breaks backward compatibility)

v0.10

• Adding LoggingConfiguration.reset
• Removing PBSExecutor
• Removing implicit parameters on cluster jobs, esp. cpu=1 and mem=2
• Allowing Executor to call start() in the same way as other executors
• Process-safe check logging in integration_testing
• Catching all exceptions in Communicator.__del__
• Stricter versions in requirements.txt

v0.9.1

• Adding - and . to replaceable characters in clarity.sanitise_user_id
• Making Session objects unique to child processes in rest_communication

v0.9

• Breaking change: removed clarity.get_expected_yield_for_sample
• Catching notification failures
• Added retries and multiprocessing lock to rest_communication
• Added log warnings to util.find_file
• Added integration_testing library and runner

v0.8.2

• New constant to record number of Phix reads

v0.8.1

• New constants capturing the Interop metrics
• New function for querying dict with dot notation