v0.12.0

• Cleaned up reference_data.upload_species_without_genome
• report_runs now only reports the latest run in instances where a flowcell has been sequenced more than once
• Fixes unexpected deletion of non-production runs in data_deletion.raw_data

v0.11.1

• Bugfix for data download confirmation
• Support for Asana API changes

v0.11

• Project report updates:
  • KAPA library prep
  • GATK4 pipelines
  • Dragen rapid processing

v0.10.1

• Removed old project report
• Removed old aggregation usage
• Pointing user to attached project report in delivery email

v0.10

• Project report appendix tables are now fit dynamically, depending on their content
• Project report code refactor, modifying project_information.py, project_report_latex.py, pylatex_ext.py and utils.py
• Fixed bug when performing final data deletion by filtering out "Undetermined" sample IDs
• Project report now supports different analysis types
• Data deletion now removes sample folder
• Provides more accurate feedback if data deletion fails, detailing only the cause of failure
• Project report is now generated using Latex and converting it to PDF before exporting
• lims.get_processes now uses the appropriate parameter
• Try/except catches cases where human has more than one analysis type

v0.9

• reference_data.py now downloads reference genomes from Ensembl and EnsemblGenomes. It also prepare the data, upload metadata and perform simple validation.
• delete_data.py has a new mode for deletion of orphan filestub in the DMF filesystem
• Fix bug in data deletion where fluidX samples where ignored in the delivered folder
• New report run script that generate email to report successes/failures/repeats to the lab

v0.8

• New mode in delete_data.py to perform final data deletion.
• detect_sample_to_delete.py has a mode to detect sample ready for final deletion
• Raw data deletion now select run that have been reviewed 14 days ago. It also uses notification in case of a crash

v0.7

• Added customer details and signatures to project report (new config entry)
• Added additional reporting to GeL data delivery and enhancing --force option
• Switched data delivery over to use a delivery step URI
  • removed --mark_only, --project_id, --sample_id
  • added --process_id
• Added integration test suite

v0.6

• email sent in HTML rather than plain text
• Project summary examples generated
• Fixes made to project report

v0.5

• Added new script to rsync data to GEL and notify their REST API
• Added recall_sample.py for recalling a sample from tape