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update pip version comparative-annotation-toolkit dockerfile
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@nidhi12k
nidhi12k committed Jan 7, 2025
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2 changes: 1 addition & 1 deletion comparative-annotation-toolkit/2.2.1/Dockerfile
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Expand Up @@ -66,7 +66,7 @@ RUN apt-get update
RUN apt-get install -y wget bedtools bamtools samtools sqlite3 libgsl0-dev libcolamd2 software-properties-common libcurl4-openssl-dev exonerate
RUN add-apt-repository -y ppa:deadsnakes/ppa
RUN apt-get install -y python3.7 python3-pip
RUN python3.7 -m python3-pip install --upgrade python3-pip #added
RUN python3.7 -m pip3 install --upgrade pip3 #added
# Kent
RUN for i in wigToBigWig faToTwoBit gff3ToGenePred genePredToBed genePredToFakePsl bamToPsl transMapPslToGenePred \
pslPosTarget axtChain chainMergeSort pslMap pslRecalcMatch pslMapPostChain gtfToGenePred genePredToGtf bedtools \
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