update pip version comparative-annotation-toolkit dockerfile

EichlerLab · Jan 7, 2025 · b31d5f8 · b31d5f8
1 parent d4e8beb
commit b31d5f8
Showing 1 changed file with 9 additions and 3 deletions.
diff --git a/comparative-annotation-toolkit/2.2.1/Dockerfile b/comparative-annotation-toolkit/2.2.1/Dockerfile
@@ -64,9 +64,15 @@ RUN tar xvjf sambamba_v0.6.7_linux.tar.bz2
 FROM ubuntu:18.04
 RUN apt-get update
 RUN apt-get install -y wget bedtools bamtools samtools sqlite3 libgsl0-dev libcolamd2 software-properties-common libcurl4-openssl-dev exonerate
-RUN add-apt-repository -y ppa:deadsnakes/ppa
-RUN apt-get install -y python3.7 pip3
-RUN python3.7 -m pip3 install --upgrade pip3 #added
+#RUN add-apt-repository -y ppa:deadsnakes/ppa
+RUN add-apt-repository -y ppa:deadsnakes/ppa && apt-get update
+
+RUN apt-get install -y python3.7 python3.7-distutils
+RUN python3.7 -m ensurepip --upgrade
+RUN python3.7 -m pip install --upgrade pip
+
+#RUN apt-get install -y python3.7 pip install --upgrade pip
+#RUN python3.7 -m pip3 install --upgrade pip3 #added
 # Kent
 RUN for i in wigToBigWig faToTwoBit gff3ToGenePred genePredToBed genePredToFakePsl bamToPsl transMapPslToGenePred \
 pslPosTarget axtChain chainMergeSort pslMap pslRecalcMatch pslMapPostChain gtfToGenePred genePredToGtf bedtools \