update expected cases

tests/data/expected_mkdocs.md

@@ -14,7 +14,7 @@ This page provides comprehensive information about the structure and components
         ontology(Ontology)
         test(Test) --> test2(Test2)
         test(Test) --> ontology(Ontology)
-    
+
         click test "#test" "Go to Test"
         click test2 "#test2" "Go to Test2"
         click ontology "#ontology" "Go to Ontology"
@@ -35,9 +35,12 @@ __name__* `string`
 
 - The name of the test.
 
+
 __number__ `float`
 
 
+- `Default`: 1.0
+
 __test2__ [`list[Test2]`](#test2)
 
 
@@ -57,7 +60,6 @@ __number__ `float`
 - `Minimum`: 0
 
 
-
 ## Enumerations
 
 ### Ontology

tests/data/expected_python_dc.py

@@ -1,60 +1,95 @@
-{
-  "$schema": "http://json-schema.org/draft-07/schema",
-  "title": "Test",
-  "type": "object",
-  "properties": {
-    "name": {
-      "title": "name",
-      "description": "The name of the test.",
-      "term": "schema:hello",
-      "type": "string"
-    },
-    "number": {
-      "title": "number",
-      "term": "schema:one",
-      "type": "number"
-    },
-    "test2": {
-      "term": "schema:something",
-      "type": "array",
-      "items": {
-        "$ref": "#/definitions/Test2"
-      }
-    },
-    "ontology": {
-      "title": "ontology",
-      "$ref": "#/definitions/Ontology"
-    }
-  },
-  "definitions": {
-    "Ontology": {
-      "title": "Ontology",
-      "type": "string",
-      "enum": [
-        "https://www.evidenceontology.org/term/",
-        "https://amigo.geneontology.org/amigo/term/",
-        "http://semanticscience.org/resource/"
-      ]
-    },
-    "Test2": {
-      "title": "Test2",
-      "type": "object",
-      "properties": {
-        "names": {
-          "title": "names",
-          "term": "schema:hello",
-          "type": "array",
-          "items": {
-            "type": "string"
-          }
-        },
-        "number": {
-          "title": "number",
-          "term": "schema:one",
-          "type": "number",
-          "minimum": 0.0
+## This is a generated file. Do not modify it manually!
+
+from __future__ import annotations
+from dataclasses import dataclass, field
+from dataclasses_json import config, dataclass_json
+from typing import List, Optional
+from enum import Enum
+from uuid import uuid4
+from datetime import date, datetime
+
+
+@dataclass_json
+@dataclass
+class Test:
+    name: str
+    number: float = 1.0
+    test2: List[Test2] = field(default_factory=list)
+    ontology: Optional[Ontology] = None
+
+    # JSON-LD fields
+    id: str = field(
+        metadata=config(field_name="@id"),
+        default_factory=lambda: "tst:Test/" + str(uuid4())
+    )
+    __type__: list[str] = field(
+        metadata=config(field_name="@type"),
+        default_factory = lambda: [
+            "tst:Test",
+        ],
+    )
+    __context__: dict[str, str | dict] = field(
+        metadata=config(field_name="@context"),
+        default_factory = lambda: {
+            "tst": "https://www.github.com/my/repo/",
+            "schema": "http://schema.org/",
+            "name": {
+                "@id": "schema:hello",
+                "@type": "@id",
+            },
+            "number": "schema:one",
+            "test2": "schema:something",
         }
-      }
-    }
-  }
-}
+    )
+
+
+    def add_to_test2(
+        self,
+        names: List[str]= [],
+        number: Optional[float]= None,
+        **kwargs,
+    ):
+        params = {
+            "names": names,
+            "number": number
+        }
+
+        self.test2.append(
+            Test2(**params)
+        )
+
+        return self.test2[-1]
+
+
+@dataclass_json
+@dataclass
+class Test2:
+    names: List[str] = field(default_factory=list)
+    number: Optional[float] = None
+
+    # JSON-LD fields
+    id: str = field(
+        metadata=config(field_name="@id"),
+        default_factory=lambda: "tst:Test2/" + str(uuid4())
+    )
+    __type__: list[str] = field(
+        metadata=config(field_name="@type"),
+        default_factory = lambda: [
+            "tst:Test2",
+        ],
+    )
+    __context__: dict[str, str | dict] = field(
+        metadata=config(field_name="@context"),
+        default_factory = lambda: {
+            "tst": "https://www.github.com/my/repo/",
+            "schema": "http://schema.org/",
+            "names": "schema:hello",
+            "number": "schema:one",
+        }
+    )
+
+
+class Ontology(Enum):
+    ECO = "https://www.evidenceontology.org/term/"
+    GO = "https://amigo.geneontology.org/amigo/term/"
+    SIO = "http://semanticscience.org/resource/"

tests/data/expected_python_sdrdm.py

@@ -24,7 +24,7 @@ class Test(
         )
 
     number: Optional[float] = attr(
-            default=None,
+            default=1.0,
             tag="number",
             json_schema_extra=dict(term = "schema:one",)
         )
@@ -43,16 +43,15 @@ class Test(
 
     _repo: str = PrivateAttr(default="https://www.github.com/my/repo/")
 
-    
+
     def add_to_test2(
         self,
-        names: List[str],
-        number: Optional[float],
+        names: List[str]= [],
+        number: Optional[float]= None,
         **kwargs,
     ):
         params = {
-
-            "names": names, 
+            "names": names,
             "number": number
         }
 
@@ -62,6 +61,7 @@ def add_to_test2(
 
         return self.test2[-1]
 
+
 class Test2(
     sdRDM.DataModel,
     search_mode="unordered",
@@ -80,7 +80,6 @@ class Test2(
 
     _repo: str = PrivateAttr(default="https://www.github.com/my/repo/")
 
-
 
 class Ontology(Enum):
     ECO = "https://www.evidenceontology.org/term/"

tests/data/expected_sdrdm_schema.json

@@ -6,7 +6,7 @@
         {
           "name": "name",
           "multiple": false,
-          "is_id": false,
+          "is_id": true,
           "dtypes": ["string"],
           "docstring": "The name of the test.",
           "options": [],
@@ -26,6 +26,7 @@
           "options": [],
           "term": "schema:one",
           "required": false,
+          "default": 1.0,
           "xml": {
             "is_attr": true,
             "name": "number"

tests/data/expected_shacl.ttl

@@ -7,42 +7,37 @@
 tst:TestShape
     a sh:NodeShape ;
     sh:targetClass md:Test ;
-    
+
     sh:property [
         sh:path schema:hello ;
         sh:datatype xsd:string ;
         sh:minCount 1 ;
         sh:maxCount 1 ;
-
     ];
     sh:property [
         sh:path schema:one ;
         sh:datatype xsd:double ;
         sh:minCount 0 ;
         sh:maxCount 1 ;
-
     ];
     sh:property [
         sh:path schema:something ;
         sh:node md:Test2Shape ;
         sh:minCount 0 ;
-
     ];
 
 tst:Test2Shape
     a sh:NodeShape ;
     sh:targetClass md:Test2 ;
-    
+
     sh:property [
         sh:path schema:hello ;
         sh:datatype xsd:string ;
         sh:minCount 0 ;
-
     ];
     sh:property [
         sh:path schema:one ;
         sh:datatype xsd:double ;
         sh:minCount 0 ;
         sh:maxCount 1 ;
-
     ].

tests/data/expected_xml_schema.xsd

@@ -4,31 +4,38 @@
     <!-- Roots -->
     <xs:element name="Test" type="TestType"/>
     <xs:element name="Test2" type="Test2Type"/>
-    
+
     <!-- Test Definition -->
     <xs:complexType name="TestType">
         <xs:sequence>
             <xs:element name="test2">
                 <xs:complexType>
                     <xs:sequence>
-                        <xs:element name="Test2" type="Test2Type"  maxOccurs="unbounded"/>
+                        <xs:element name="Test2" type="Test2Type" maxOccurs="unbounded"/>
                     </xs:sequence>
                 </xs:complexType>
             </xs:element>
-            <xs:element name="ontology" type="OntologyType" />
+            <xs:element name="ontology" type="OntologyType"/>
         </xs:sequence>
-        <xs:attribute name="name" type="xs:string" use="required"/>
-        <xs:attribute name="number" type="xs:float" />
+
+        <xs:attribute name="name" type="xs:string"  use="required">
+            <xs:annotation>
+                <xs:documentation>
+                    The name of the test.
+                </xs:documentation>
+            </xs:annotation>
+        </xs:attribute>
+        <xs:attribute name="number" type="xs:float" default="1.0"/>
     </xs:complexType>
-    
+
     <!-- Test2 Definition -->
     <xs:complexType name="Test2Type">
         <xs:sequence>
             <xs:element name="names" type="xs:string"  maxOccurs="unbounded"/>
         </xs:sequence>
-        <xs:attribute name="number" type="xs:float" />
+        <xs:attribute name="number" type="xs:float"/>
     </xs:complexType>
-    
+
     <!-- Enum Ontology Definition -->
     <xs:simpleType name="OntologyType">
         <xs:restriction base="xs:string">

tests/data/model.md

@@ -19,6 +19,7 @@ nsmap:
   - Type: float
   - Term: schema:one
   - XML: @number
+  - Default: 1.0
 - test2
   - Type: [Test2](#test2)[]
   - Term: schema:something