✨ Add Smith[…]desc-thresh3_mask.nii.gz

[shnizzedy]

Fixes

Related to #1 by @shnizzedy, @milham01 and @engfranco

Description

Adds a binary mask image at Z = 3 created from "10 well-matched maps from these, as shown in PNAS paper" from Correspondence between BrainMap and Resting-FMRI ICA components¹

Screenshots

z.3.mp4

Checklist

• My pull request has a descriptive title (not a vague title like Update index.md).
• My pull request targets the main branch of the repository.
• My commit messages follow best practices.
• My code follows the established code style of the repository.
• I added tests for the changes I made (if applicable).
• I updated the changelog.
• I added or updated documentation (if applicable).
• I tried running the project locally and verified that there are no visible errors.

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Footnotes

1. Smith, Stephen M et al. “Correspondence of the brain's functional architecture during activation and rest.” Proceedings of the National Academy of Sciences of the United States of America vol. 106,31 (2009): 13040-5. doi:10.1073/pnas.0905267106 ↩

[shnizzedy]

I don't love that I haven't finished the row for this entry in the table in the README

Atlas Name	# Regions	Symmetrical?	Hierarchical?	Labelled?	Generation Method	Average Vol/Region	Native coordinate space	Description	Reference Publication	Year of Origin	File Source/Download URL
Smith desc-thresh3	10				scripts/threshold_mask.py			Smith (above) thresholded at Z = 3 as in Fig 1	doi:10.1073/pnas.0905267106	2009

but I figure most of that will be the same as the row above it once #2 is done

[shnizzedy]

I'm also not quite confident that I got the BIDS filename quite right:

Smith_space-MNI152NLin6_res-3x3x3_desc-thresh3_mask.nii.gz ?

[sgiavasis]

I'm also not quite confident that I got the BIDS filename quite right:

Smith_space-MNI152NLin6_res-3x3x3_desc-thresh3_mask.nii.gz ?

As long as it gets pulled into the engine properly and the resulting output files are named properly, it's good.