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@FrancisCrickInstitute

The Francis Crick Institute

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  1. TRACERx-PHLEX TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    Shell 12

  2. Etch-a-Cell-Nuclear-Envelope Etch-a-Cell-Nuclear-Envelope Public

    Python 8 1

  3. OmeSliCC OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    Python 7 1

  4. ActiveUnetSegmentation ActiveUnetSegmentation Public

    Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.

    Python 6

  5. sparks sparks Public

    Jupyter Notebook 6 1

  6. warpAnnotations warpAnnotations Public

    A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.

    MATLAB 5

Repositories

Showing 10 of 131 repositories
  • mito-synapto-spine-analysis Public
    FrancisCrickInstitute/mito-synapto-spine-analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 27, 2025
  • CALM Public

    Crick Advanced Light Microscopy

    FrancisCrickInstitute/CALM’s past year of commit activity
    Jupyter Notebook 1 CC-BY-SA-4.0 1 4 0 Updated Jan 27, 2025
  • network_invsync Public

    Verify ISE and YAML inventory are synchronized

    FrancisCrickInstitute/network_invsync’s past year of commit activity
    Python 0 GPL-3.0 0 0 11 Updated Jan 14, 2025
  • PooledPEScreen Public

    Accompanying code to "High-throughput screening of human genetic variants by pooled prime editing"

    FrancisCrickInstitute/PooledPEScreen’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 9, 2025
  • Segment-Flow Public

    Nextflow pipeline for deep learning segmentation models

    FrancisCrickInstitute/Segment-Flow’s past year of commit activity
    Python 2 1 0 0 Updated Jan 7, 2025
  • TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    FrancisCrickInstitute/TRACERx-PHLEX’s past year of commit activity
    Shell 12 MIT 0 2 0 Updated Jan 6, 2025
  • hts_neutralisation_launcher Public

    Automate neutralisation analyses

    FrancisCrickInstitute/hts_neutralisation_launcher’s past year of commit activity
    Python 0 1 2 0 Updated Dec 18, 2024
  • plaque_assay Public

    Analysis code for covid-19 serology neutralisation assay.

    FrancisCrickInstitute/plaque_assay’s past year of commit activity
    Python 0 MIT 1 6 0 Updated Dec 18, 2024
  • sparks Public
    FrancisCrickInstitute/sparks’s past year of commit activity
    Jupyter Notebook 6 GPL-3.0 1 0 0 Updated Dec 12, 2024
  • nextflow-modules Public

    Contains managed modules and subworkflows for Nextflow that can be installed into pipelines

    FrancisCrickInstitute/nextflow-modules’s past year of commit activity
    Nextflow 1 MIT 0 0 0 Updated Nov 28, 2024
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