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Bump @gmod/bam and @gmod/tabix for fileOffset fixes (#1465)
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cmdcolin authored Feb 5, 2020
1 parent 2e56166 commit eb5bb9e
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4 changes: 2 additions & 2 deletions package.json
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Expand Up @@ -42,11 +42,11 @@
"shelljs": "^0.7.8"
},
"devDependencies": {
"@gmod/bam": "^1.0.34",
"@gmod/bam": "^1.0.35",
"@gmod/cram": "^1.5.3",
"@gmod/gff": "^1.1.1",
"@gmod/indexedfasta": "^1.0.11",
"@gmod/tabix": "^1.3.2",
"@gmod/tabix": "^1.4.3",
"@gmod/tribble-index": "^2.0.3",
"@gmod/twobit": "^1.1.2",
"@gmod/vcf": "^2.0.2",
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33 changes: 22 additions & 11 deletions yarn.lock
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Expand Up @@ -172,13 +172,13 @@
dependencies:
arrify "^1.0.1"

"@gmod/bam@^1.0.34":
version "1.0.34"
resolved "https://registry.yarnpkg.com/@gmod/bam/-/bam-1.0.34.tgz#6c9ba8f6d083c45a0ee82ef0f81534a5af0bba03"
integrity sha512-b59eqjPAN3/ZlfclfQIOKBlI2S23yVANEIIBnObM4/iPmE4JlWJqwyJpu8K+b7gpQQYqHmpRAxEyKiSvn6NTaA==
"@gmod/bam@^1.0.35":
version "1.0.35"
resolved "https://registry.yarnpkg.com/@gmod/bam/-/bam-1.0.35.tgz#574586d4ecd4b74109204fac819af3c9ac46fbdd"
integrity sha512-SOMGUyxsFw/fTy37xhtyr6MVXG/38E9Ji/NUB8mV4lWFZUzNxLqNYzmvzpQ7UJAyeM5AXjjUl7nVDn0JrBaR+Q==
dependencies:
"@babel/runtime-corejs2" "^7.5.5"
"@gmod/bgzf-filehandle" "^1.3.0"
"@gmod/bgzf-filehandle" "^1.3.3"
"@types/long" "^4.0.0"
"@types/node" "^12.7.8"
abortable-promise-cache "^1.0.1"
Expand All @@ -189,7 +189,7 @@
object.entries-ponyfill "^1.0.1"
quick-lru "^2.0.0"

"@gmod/bgzf-filehandle@^1.2.4", "@gmod/bgzf-filehandle@^1.3.0":
"@gmod/bgzf-filehandle@^1.2.4":
version "1.3.0"
resolved "https://registry.yarnpkg.com/@gmod/bgzf-filehandle/-/bgzf-filehandle-1.3.0.tgz#d4396824292f5c8153854f0f9b4765fe6d59f41c"
integrity sha512-gylH3lFO3aE4ktYg8ThToOGZp6ueFWSK2Ds8hbed48XDi6TahXz4Q79m+qoJj0B6MHXYhIiAj76YKdHaESeYSw==
Expand All @@ -200,6 +200,17 @@
long "^4.0.0"
pako "^1.0.10"

"@gmod/bgzf-filehandle@^1.3.3":
version "1.3.3"
resolved "https://registry.yarnpkg.com/@gmod/bgzf-filehandle/-/bgzf-filehandle-1.3.3.tgz#c6bdfca15ce3b8e5144395ab2a6e2f39624c12e6"
integrity sha512-hvCOtz5Q+WZ9pstYM7Kk9tQAMOMVIhqPIheVJtK1AbsA7oi1lFQsacr+fDGZMt2Bcl8AYoYRQqTJI4sMfrtncA==
dependencies:
"@babel/runtime" "^7.3.4"
es6-promisify "^6.0.1"
fs-extra "^7.0.0"
long "^4.0.0"
pako "^1.0.10"

"@gmod/binary-parser@^1.3.5":
version "1.3.5"
resolved "https://registry.yarnpkg.com/@gmod/binary-parser/-/binary-parser-1.3.5.tgz#6b460565ce8b2df2c03c05b5a617791dfd779c35"
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"@gmod/bgzf-filehandle" "^1.2.4"
es6-promisify "^6.0.1"

"@gmod/tabix@^1.3.2":
version "1.4.2"
resolved "https://registry.yarnpkg.com/@gmod/tabix/-/tabix-1.4.2.tgz#d6c998485dcd1c21abf43334c5ccffb68a42f4e5"
integrity sha512-zGXW1nBIZSAXytZ56/c9MA3R4CIuneOUHccTTX/IL7w4WCT3EanXdFy9jWPZD4N0HmkbmZhQze0y276eAb5oDQ==
"@gmod/tabix@^1.4.3":
version "1.4.3"
resolved "https://registry.yarnpkg.com/@gmod/tabix/-/tabix-1.4.3.tgz#643ab06f5ae39fe1ecb1588b46abe111174b3d76"
integrity sha512-43XYG/q0oljgckcYAjSrLF/3aIjEXwGlOPP+ynbt8zNAvQam7F5LstqdoFwbuBcjesN3H1GKrNcIQpMH7eeqNg==
dependencies:
"@babel/runtime-corejs2" "^7.3.1"
"@gmod/bgzf-filehandle" "^1.3.0"
"@gmod/bgzf-filehandle" "^1.3.3"
abortable-promise-cache "^1.0.1"
es6-promisify "^6.0.1"
generic-filehandle "^2.0.1"
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