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Example analysis

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Tristan Dubos edited this page Nov 16, 2020 · 2 revisions

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[[TOC]]

Autocrop image training set

To try the autocrop you can download an example image here . You can access to all wide field images used our paper in omero

Results Using autocrop with default parameters :

  • you should obtain 28 cropped nuclei (in nuclei output folder) or downloadable here .

  • The following zprojection file is generated (in zprojection output folder) or downloadable here :

![WT-W1_Zprojection](uploads/6b687c83e177331a9b56644a18654a4a/WT-W1_Zprojection.jpg)

Segmentation image example

You can try to segment nuclei , example image are available LINK. These images come from the previous wide field image so if you did the autocrop step you should already have nuclei files.

Here you can download results you should obtain LINK.

  • Segmented images files : LINK

  • Tabulate file (1 for the OTSU folder, 1 in the GIFT wrapping folder) :

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