Aide app

[laurencejackson]

Refactors MRS code to be compatible with aide deployment using the aide-sdk.

Changes github actions workflows to use environment defined by Dockerfile instead of python venv

Documentation moved to /documents/

[github-actions]

Coverage Report

File	Stmts	Miss	Cover	Missing
mrs
MRSOperator.py	16	16	0%	1–33
mrs/dicom
series.py	113	44	61%	35, 54–57, 61–67, 74–77, 81–85, 92–93, 100–103, 110–111, 115–120, 128–129, 136–144, 149–157, 184, 190–191
study.py	113	44	61%	41, 55–56, 60, 63, 66, 81, 99–105, 109–112, 116–122, 129–132, 136–142, 146–149, 162–166, 178–179, 218–219, 242–243
mrs/processing
MRSJob.py	371	40	89%	56–57, 60–63, 97–99, 105–107, 161–163, 171–173, 217–219, 278–279, 308, 321, 330–331, 368–369, 435–436, 457–461, 493–494, 571, 672, 681–683
MRSTask.py	164	46	72%	80–87, 92–93, 116–124, 136–138, 150–153, 163–194, 205–223, 261, 272, 303
mrs/reporting
MRSNormalChart.py	18	9	50%	14–15, 19–26
mrs/tools
myemail.py	97	44	55%	74–80, 86–87, 104–126, 156–173, 181
tools.py	189	45	76%	37–42, 70, 77–80, 102–107, 126–128, 141–147, 162–167, 185–187, 199–203, 238, 302, 315–327
TOTAL	1096	288	74%

Tests	Skipped	Failures	Errors	Time
15	2 💤	2 ❌	0 🔥	1m 39s ⏱️

[hshuaib90]

What happens here in context of AIDE?

[laurencejackson]

It looks for the APP_DATA_DIR inside the container the application runs in. The image does not have this folder so it will always create a new one.

[hshuaib90]

How are config files read in AIDE?

[laurencejackson]

Similar to above, the dicomserver config lives entirely within the container where the app runs. There is no configuration that extends beyond the container, other than the few bits in the manifest file.