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Porting hazen to python 3.9#143

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tomaroberts merged 72 commits intorelease/0.5.0GSTT-CSC/hazen:release/0.5.0from hazen-3.9-miniforgeGSTT-CSC/hazen:hazen-3.9-miniforgeCopy head branch name to clipboardDec 7, 2021

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Commits

Commits on Nov 15, 2021

• Adds WIP miniforge environment.yml - builds hazen in 3.9, but 23 test errors

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• Fix .astype(int) causing error

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• Remove superfluous commented lines.

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• Alters findContours syntax - spatial_resolution function now outputs

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Commits on Nov 19, 2021

• Adds env.yml for testing matplotlib version

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• Adds env.yml for testing old opencv version

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• Adds requirements.txt for testing Docker hazen3.6 with latest numpy

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Commits on Nov 22, 2021

• Correct for 90 degree rotation of square/rectangles

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• Amend tests to reflect 90 degree rotation of square/rectangles

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• Adjusts hazen code to account for cv.minAreaRect() changes between OpenCV versions

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• Create tests_development_py3.9.yml

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• Update test_spatial_resolution to reflect new OpenCV version values

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• Update tests_development_py3.9.yml

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• Update tests_development_py3.9.yml

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• Update tests_development_py3.9.yml

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• Testing

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• Testing

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• Testing

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• Test install any psycopg2-binary version

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• Try build with psycopg2-binary removed from env.yml

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• Test install psycopg2-binary via pip section in env.yml

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• Testing

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• Adds default bash shell to .yml

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Commits on Nov 23, 2021

• Update werkzeug version for Actions testing

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• Remove old tests_development.yml / replace with finalised python3.9 version

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• wip: Updating README.md

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Commits on Nov 24, 2021

• Remove old WIP files

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• Update requirements.txt - will not work on M1 / to be tested on other architectures

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• Bugfix: missing = sign

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• Changed GitHub Actions to python 3.9

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Commits on Nov 29, 2021

• Revert .astype(int) change

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• Adds Ibn Al-Haytham image

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• Revert "Revert .astype(int) change"

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• Add snr/ghosting example images to assets

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• Update README.md

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• Make horizontal lines consistent

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• Adds enhance version of Ibn

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• setuptools & wheel required so opencv install works

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Commits on Dec 1, 2021

• Revert "Adds enhance version of Ibn"

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Commits on Dec 6, 2021

• Adds assert_allclose to shape tests / removes round_tuple

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• Merge branch 'readme-dev' into hazen-3.9-miniforge

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• Update Git workflows python to v3.9.7

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• m2r package hotfix

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• m2r version change test

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• mistune<2.0.0 test

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Commits on Dec 7, 2021

• Changes workflows versions to python 3.9

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• Update test_development.yml with os/python matrix

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• Indentation fix

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• Remove macos from matrix (for now)

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• Remove specific python version from env.yml

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• python 3.9 - os.matrix test

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• os.matrix python3.10 test

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• Adds auto-update-conda, remove client-env, base true

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• Remove conda – test workflows with python3.9

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• Try os.matrix macos / python versions

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• Drop macos from tests

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• Remove scikit / numpy exact versions

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• Update cli-test / tests_release

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• Adds pip list for debugging

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• Update requirements.txt with fixed versions

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• Update README.md – important addition of openssl instructions

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• Merge branch 'release/0.5.0' into hazen-3.9-miniforge

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