HCA Scanpy Demo

Installation

This notebook assumes that you have installed python 3 on your system, and that the pip executable installs packages for that python distribution. For some users, it may be necessary to use pip3 instead.

pip install -r ./REQUIREMENTS.txt

Usage

Start up the jupyter kernel, which will open a web browser. You can then select the hca_demo_scanpy.ipynb notebook from the Files sidebar.

jupyter lab