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regenerated all of the HDR UK schema.json files used for validation
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camilner-hdr committed Jul 24, 2024
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2 changes: 1 addition & 1 deletion hdr_schemata/models/HDRUK/2.1.2/schema.json
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"issued": {
"description": "Datetime stamp of when this metadata version was initially issued",
"format": "date-time",
"title": "Metadata Issued Datetime',",
"title": "Metadata Issued Datetime",
"type": "string"
},
"modified": {
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4 changes: 2 additions & 2 deletions hdr_schemata/models/HDRUK/2.1.3/schema.json
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}
],
"description": "Please indicate the frequency of distribution release. If a dataset is distributed regularly please choose a distribution release periodicity from the constrained list and indicate the next release date. When the release date becomes historical, a new release date will be calculated based on the publishing periodicity. If a dataset has been published and will remain static please indicate that it is static and indicated when it was released. If a dataset is released on an irregular basis or \u201con-demand\u201d please indicate that it is Irregular and leave release date as null. If a dataset can be published in real-time or near-real-time please indicate that it is continuous and leave release date as null. Notes: see https://www.dublincore.org/specifications/dublin-core/collection-description/frequency/",
"guidance": "'- Please indicate the frequency of publishing.\\n- If a dataset is published regularly please choose a publishing periodicity from the constrained list and indicate the next release date.\\n- When the release date becomes historical, a new release date will be calculated based on the publishing periodicity.\\n- If a dataset has been published and will remain static please indicate that it is static and indicate when it was released.\\n- If a dataset is released on an irregular basis or \u201con-demand\u201d please indicate that it is Irregular and leave release date as null.\\n- If a dataset can be published in real-time or near-real-time please indicate that it is continuous and leave release date as null.\\n- Notes: see <https://www.dublincore.org/specifications/dublin-core/collection-description/frequency/>\\n- **Static**: Dataset published once.\\n- **Irregular**: Dataset published at uneven intervals.\\n- **Continuous**: Dataset published without interruption.\\n- **Biennial**: Dataset published every two years.\\n- **Annual**: Dataset published occurs once a year.\\n- **Biannual**: Dataset published twice a year.\\n- **Quarterly**: Dataset published every three months.\\n- **Bimonthly**: Dataset published every two months.\\n- **Monthly**: Dataset published once a month.\\n- **Biweekly**: Dataset published every two weeks.\\n- **Weekly**: Dataset published once a week.\\n- **Twice weekly**: Dataset published twice a week.\\n- **Daily**: Dataset published once a day.\\n- **Other**: Dataset published using other interval.',",
"guidance": "Please indicate the frequency of publishing.\\n- If a dataset is published regularly please choose a publishing periodicity from the constrained list and indicate the next release date.\\n- When the release date becomes historical, a new release date will be calculated based on the publishing periodicity.\\n- If a dataset has been published and will remain static please indicate that it is static and indicate when it was released.\\n- If a dataset is released on an irregular basis or \u201con-demand\u201d please indicate that it is Irregular and leave release date as null.\\n- If a dataset can be published in real-time or near-real-time please indicate that it is continuous and leave release date as null.\\n- Notes: see https://www.dublincore.org/specifications/dublin-core/collection-description/frequency/.\\n\\n Options:\\n- **Static**: Dataset published once.\\n- **Irregular**: Dataset published at uneven intervals.\\n- **Continuous**: Dataset published without interruption.\\n- **Biennial**: Dataset published every two years.\\n- **Annual**: Dataset published occurs once a year.\\n- **Biannual**: Dataset published twice a year.\\n- **Quarterly**: Dataset published every three months.\\n- **Bimonthly**: Dataset published every two months.\\n- **Monthly**: Dataset published once a month.\\n- **Biweekly**: Dataset published every two weeks.\\n- **Weekly**: Dataset published once a week.\\n- **Twice weekly**: Dataset published twice a week.\\n- **Daily**: Dataset published once a day.\\n- **Other**: Dataset published using other interval.",
"title": "Publishing Frequency"
}
},
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"issued": {
"description": "Datetime stamp of when this metadata version was initially issued",
"format": "date-time",
"title": "Metadata Issued Datetime',",
"title": "Metadata Issued Datetime",
"type": "string"
},
"modified": {
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2 changes: 1 addition & 1 deletion hdr_schemata/models/HDRUK/2.2.0/schema.json
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"issued": {
"description": "Datetime stamp of when this metadata version was initially issued",
"format": "date-time",
"title": "Metadata Issued Datetime',",
"title": "Metadata Issued Datetime",
"type": "string"
},
"modified": {
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16 changes: 8 additions & 8 deletions hdr_schemata/models/HDRUK/2.2.1/schema.json
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"examples": [
"LOCAL,NHS DATA DICTIONARY"
],
"guidance": "'- List standardised data models that the dataset has been stored in or transformed to, such as OMOP or FHIR.\\n- If the data is only available in a local format, please make that explicit. If you are using a standard that has not been included in the list, please use \u201cother\u201d and contact support desk to ask for an addition.\\n- **HL7 FHIR**: <https://www.hl7.org/fhir/>\\n- **HL7 V2**: <https://www.hl7.org/implement/standards/product_section.cfm?section=13>\\n- **HL7 CDA**: <https://www.hl7.org/implement/standards/product_section.cfm?section=10>\\n- **HL7 CCOW**: <https://www.hl7.org/implement/standards/product_section.cfm?section=16>\\n- **DICOM**: <https://www.dicomstandard.org/>\\n- **I2B2**: <https://www.i2b2.org/>\\n- **IHE**: <https://www.ihe.net/resources/profiles/>\\n- **OMOP**: <https://www.ohdsi.org/data-standardization/the-common-data-model/>\\n- **openEHR**: <https://www.openehr.org/>\\n- **Sentinel**: <https://www.sentinelinitiative.org/sentinel/data/distributed-database-common-data-model>\\n- **PCORnet**: <https://pcornet.org/data-driven-common-model/>\\n- **CDISC**: <https://www.cdisc.org/standards/data-exchange/odm>\\n- **Local**: In-house developed data model\\n- **Other**: Other standardised data model\\n- **NHS Data Dictionary**: <https://www.datadictionary.nhs.uk/>\\n- **NHS Scotland Data Dictionary**: <https://www.ndc.scot.nhs.uk/Data-Dictionary/>\\n- **NHS Wales Data Dictionary**: <https://www.datadictionary.wales.nhs.uk/>',",
"guidance": "- List standardised data models that the dataset has been stored in or transformed to, such as OMOP or FHIR.\\n- If the data is only available in a local format, please make that explicit. If you are using a standard that has not been included in the list, please use \u201cother\u201d and contact support desk to ask for an addition.\\n- **HL7 FHIR**: <https://www.hl7.org/fhir/>.\\n- **HL7 V2**: <https://www.hl7.org/implement/standards/product_section.cfm?section=13>.\\n- **HL7 CDA**: <https://www.hl7.org/implement/standards/product_section.cfm?section=10>.\\n- **HL7 CCOW**: <https://www.hl7.org/implement/standards/product_section.cfm?section=16>.\\n- **DICOM**: <https://www.dicomstandard.org/>.\\n- **I2B2**: <https://www.i2b2.org/>.\\n- **IHE**: <https://www.ihe.net/resources/profiles/>.\\n- **OMOP**: <https://www.ohdsi.org/data-standardization/the-common-data-model/>.\\n- **openEHR**: <https://www.openehr.org/>.\\n- **Sentinel**: <https://www.sentinelinitiative.org/sentinel/data/distributed-database-common-data-model>.\\n- **PCORnet**: <https://pcornet.org/data-driven-common-model/>.\\n- **CDISC**: <https://www.cdisc.org/standards/data-exchange/odm>.\\n- **Local**: In-house developed data model.\\n- **Other**: Other standardised data model.\\n- **NHS Data Dictionary**: <https://www.datadictionary.nhs.uk/>.\\n- **NHS Scotland Data Dictionary**: <https://www.ndc.scot.nhs.uk/Data-Dictionary/>.\\n- **NHS Wales Data Dictionary**: <https://www.datadictionary.wales.nhs.uk/>.",
"title": "Alignment with standardised data models"
},
"language": {
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"$ref": "#/$defs/MeasuredProperty"
}
],
"description": "Descibe the property used to measure each observation.",
"guidance": "The default value is 'COUNT' (e.g. the count of persons who are in the cohort)",
"description": "Descriptive term for the observation property measured. For example, people, procedures, x-rays, or diagnosis of type 1 diabetes. This could also be a specific SNOMED CT term.",
"guidance": "Descriptive term for the observation property measured.",
"title": "Measured property"
}
},
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],
"default": null,
"description": "Please indicate the purpose(s) that the dataset was collected.",
"guidance": "-**Research cohort**: Data collected for a defined group of people.\\n- **Study**: Data collected for a specific research study.\\n- **Disease registry**: Data collected as part of a disease registry.\\n- **Trial**: Data collected for as part of a clinical trial.\\n- **Care**: Data collected as part of routine clinical care.\\n- **Audit**: Data collected as part of an audit programme\\n- **Administrative**: Data collected for administrative and management information purposes\\n- **Financial**: Data collected either for payments or for billing\\n- **Other**: Data collected for other purpose',",
"guidance": "- **Research cohort**: Data collected for a defined group of people.\\n- **Study**: Data collected for a specific research study.\\n- **Disease registry**: Data collected as part of a disease registry.\\n- **Trial**: Data collected for as part of a clinical trial.\\n- **Care**: Data collected as part of routine clinical care.\\n- **Audit**: Data collected as part of an audit programme.\\n- **Administrative**: Data collected for administrative and management information purposes.\\n- **Financial**: Data collected either for payments or for billing.\\n- **Statutory**: ...........\\n- **Other**: Data collected for other purpose.",
"title": "Purpose of dataset collection"
},
"source": {
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],
"default": null,
"description": "Please indicate the source of the data extraction.",
"guidance": "- **EPR**: Data Extracted from Electronic Patient Record\\n- **Electronic survey**: Data has been extracted from electronic surveys\\n- **LIMS**: Data has been extracted from a laboratory information management system\\n- **Paper-based**: Data has been extracted from paper forms\\n- **Free text NLP**: Data has been extracted from unstructured freetext using natural language processing\\n- **Machine generated**: Data has been machine generated i.e. imaging\\n- **Other**: Data has been extracted by other means',",
"guidance": " - **EPR**: Data Extracted from Electronic Patient Record.\\n- **Electronic survey**: Data has been extracted from electronic surveys.\\n- **LIMS**: Data has been extracted from a laboratory information management system.\\n- **Paper-based**: Data has been extracted from paper forms.\\n- **Free text NLP**: Data has been extracted from unstructured freetext using natural language processing.\\n- **Machine generated**: Data has been machine generated i.e. imaging.\\n- **Other**: Data has been extracted by other means.",
"title": "Source of data extraction"
},
"collectionSituation": {
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}
],
"default": null,
"description": "Coverate by origin (geographical and situations).",
"description": "Coverage by origin (geographical and situations).",
"title": "Origin Coverage"
},
"temporal": {
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"issued": {
"description": "Datetime stamp of when this metadata version was initially issued",
"format": "date-time",
"title": "Metadata Issued Datetime',",
"title": "Metadata Issued Datetime",
"type": "string"
},
"modified": {
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"title": "Enrichment and Linkage"
},
"observations": {
"description": "Multiple observations about the dataset may be provided and users are expected to provide at least one observation \n(1..*). We will be supporting the schema.org observation model (https://schema.org/Observation) with default values. Users will be encouraged to provide their own statistical populations as the project progresses. \nExample: \n &lt;b&gt; Statistical Population 1 \n &lt;/b&gt; type: StatisticalPopulation populationType: Persons numConstraints: 0 \n &lt;b&gt; Statistical Population 2 &lt;/b&gt; type: StatisticalPopulation populationType: Events numConstraints: 0 &lt;b&gt; Statistical Population 3 &lt;/b&gt; type: StatisticalPopulation populationType: Findings numConstraints: 0 typeOf: Observation observedNode: &lt;b&gt; Statistical Population 1 &lt;/b&gt; measuredProperty: count measuredValue: 32937 observationDate: \u201c2017\u201d\"\n",
"description": "This section provides an overview of observations of your dataset linked to specific points in time. Multiple observations about the dataset are encouraged to be provided, including multiple observations of the same property at different timepoints. At least one observation is required.",
"items": {
"$ref": "#/$defs/Observation"
},
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