Check and build given lits of DL4MicEverywhere folders #49
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| name: Check and build given lits of DL4MicEverywhere folders | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| config_file_list: # the variable you can use in place of a matrix | |
| description: 'List of folders and subfolder names from DL4MicEverywhere, they need to be separated by spaces. eg. "ZeroCostDL4Mic_notebooks/CARE_2D_DL4Mic External_notebooks/FRUNet-Exosomes Bespoke_notebooks/bioimageio-tensorflow"' | |
| type: string | |
| jobs: | |
| check_notebooks: | |
| name: Get the configurations from notebooks that need to be updated | |
| outputs: | |
| matrix: ${{ steps.create_json.outputs.matrix }} | |
| runs-on: [self-hosted, dl4miceverywhere-builder] | |
| steps: | |
| - name: Get the input list of all the notebooks | |
| id: list_notebooks | |
| run: | | |
| output="${{ inputs.config_file_list }}" | |
| echo "$output" | |
| echo "value=${output}" >> $GITHUB_OUTPUT | |
| - if: ${{ steps.list_notebooks.outputs.value != '' }} | |
| name: List and extract all notebook with new version | |
| id: create_json | |
| run: | | |
| echo "Start" | |
| files_json="{\"include\":[{\"notebook\":\"" | |
| echo "$files_json" | |
| first=true | |
| for file in ${{ steps.list_notebooks.outputs.value }}; do | |
| echo "$file was changed" | |
| if [ "$first" = true ]; then | |
| files_json+=$file | |
| first=false | |
| else | |
| files_json+="\"},{\"notebook\":\""$file | |
| fi | |
| echo "$files_json" | |
| done | |
| files_json+="\"}]}" | |
| echo "$files_json" | |
| echo "matrix=$files_json" >> $GITHUB_OUTPUT | |
| echo "END" | |
| test_deploy_solutions: | |
| if: ${{ needs.check_notebooks.outputs.matrix != '' }} | |
| name: Call the testing and deploying the solutions | |
| needs: check_notebooks | |
| uses: ./.github/workflows/aux_test_deploy_solution_list.yml # calls the one above ^ | |
| with: | |
| matrix_json: ${{ needs.check_notebooks.outputs.matrix }} | |
| secrets: inherit |