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Merge pull request #29 from cmaumet/parametric_dist
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Non-parametric distributions
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agbeltran committed Nov 28, 2014
2 parents df8e48e + 71d30cb commit 84411b1
Showing 1 changed file with 115 additions and 31 deletions.
146 changes: 115 additions & 31 deletions src/ontology/stato.owl
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<Ontology xmlns="http://www.w3.org/2002/07/owl#"
xml:base="http://purl.obolibrary.org/obo/stato.owl"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
ontologyIRI="http://purl.obolibrary.org/obo/stato.owl">
<Prefix name="" IRI="http://www.w3.org/2002/07/owl#"/>
<Prefix name="owl" IRI="http://www.w3.org/2002/07/owl#"/>
Expand All @@ -23,64 +23,64 @@
<Prefix name="rdfs" IRI="http://www.w3.org/2000/01/rdf-schema#"/>
<Import>http://purl.obolibrary.org/obo/stato/obi_import.owl</Import>
<Annotation>
<AnnotationProperty IRI="http://usefulinc.com/ns/doap#mailing-list"/>
<Literal datatypeIRI="&rdf;PlainLiteral">[email protected]</Literal>
<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/rights"/>
<Literal datatypeIRI="&xsd;anyURI">This Ontology is distributed under a Creative Commons Attribution License </Literal>
</Annotation>
<Annotation>
<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/creator"/>
<Literal datatypeIRI="&rdf;PlainLiteral">Orlaith Burke</Literal>
<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/subject"/>
<Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">Statistical Method, Design of Experiment, Plots, Statistical Model</Literal>
</Annotation>
<Annotation>
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<AnnotationProperty IRI="http://usefulinc.com/ns/doap#bug-database"/>
<Literal datatypeIRI="&rdf;PlainLiteral">https://github.com/ISA-tools/stato/issues</Literal>
</Annotation>
<Annotation>
<AnnotationProperty abbreviatedIRI="owl:versionInfo"/>
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<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/license"/>
<Literal datatypeIRI="&xsd;anyURI">http://creativecommons.org/licenses/by/3.0/</Literal>
</Annotation>
<Annotation>
<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
<Literal datatypeIRI="&rdf;PlainLiteral">STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.</Literal>
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<Literal datatypeIRI="&rdf;PlainLiteral">Thomas Nichols (http://orcid.org/0000-0002-4516-5103)</Literal>
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<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/contributor"/>
<Literal datatypeIRI="&rdf;PlainLiteral">Nolan Nichols (http://orcid.org/0000-0003-1099-3328)</Literal>
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<Annotation>
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<Literal datatypeIRI="&rdf;PlainLiteral">Thomas Nichols (http://orcid.org/0000-0002-4516-5103)</Literal>
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<Annotation>
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<Literal datatypeIRI="&xsd;anyURI">This Ontology is distributed under a Creative Commons Attribution License </Literal>
<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
<Literal datatypeIRI="&rdf;PlainLiteral">STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.</Literal>
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<Annotation>
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<Literal datatypeIRI="&rdf;PlainLiteral">Philippe Rocca-Serra (http://orcid.org/0000-0001-9853-5668)</Literal>
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<Annotation>
<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/contributor"/>
<Literal datatypeIRI="&rdf;PlainLiteral">Nolan Nichols (http://orcid.org/0000-0003-1099-3328)</Literal>
<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/creator"/>
<Literal datatypeIRI="&rdf;PlainLiteral">Orlaith Burke</Literal>
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<Annotation>
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<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/creator"/>
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</Annotation>
<Annotation>
<AnnotationProperty IRI="http://usefulinc.com/ns/doap#homepage"/>
<Literal datatypeIRI="&rdf;PlainLiteral">http://stato-ontology.org/</Literal>
<AnnotationProperty IRI="http://usefulinc.com/ns/doap#mailing-list"/>
<Literal datatypeIRI="&rdf;PlainLiteral">stat-ontology@googlegroups.com</Literal>
</Annotation>
<Declaration>
<Class IRI="http://purl.obolibrary.org/obo/STATO_0000002"/>
Expand Down Expand Up @@ -1000,6 +1000,12 @@
<Declaration>
<Class IRI="#STATO_0000298"/>
</Declaration>
<Declaration>
<Class IRI="obo:STATO_XXXX"/>
</Declaration>
<Declaration>
<Class IRI="obo:STATO_YYYY"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="http://purl.obolibrary.org/obo/STATO_0000001"/>
</Declaration>
Expand Down Expand Up @@ -7962,6 +7968,14 @@
<Class IRI="http://purl.obolibrary.org/obo/STATO_0000224"/>
</ObjectSomeValuesFrom>
</SubClassOf>
<SubClassOf>
<Class IRI="obo:STATO_XXXX"/>
<Class IRI="http://purl.obolibrary.org/obo/STATO_0000117"/>
</SubClassOf>
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<DisjointClasses>
<Class IRI="http://purl.obolibrary.org/obo/OBI_0000115"/>
<Class IRI="http://purl.obolibrary.org/obo/OBI_0300311"/>
Expand Down Expand Up @@ -8015,8 +8029,8 @@
<ObjectProperty IRI="http://purl.obolibrary.org/obo/STATO_0000110"/>
</InverseObjectProperties>
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<ObjectProperty IRI="http://purl.obolibrary.org/obo/STATO_0000001"/>
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Expand Down Expand Up @@ -22272,6 +22286,76 @@ http://stat.ethz.ch/R-manual/R-patched/library/stats/html/binom.test.html</Liter
<IRI>#STATO_0000298</IRI>
<Literal xml:lang="en" datatypeIRI="&rdf;PlainLiteral">exact binomial test</Literal>
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<AnnotationProperty IRI="http://purl.obolibrary.org/obo/IAO_0000115"/>
<IRI>obo:STATO_XXXX</IRI>
<Literal datatypeIRI="&rdf;PlainLiteral">Probability distribution estimated empirically on the data without assumptions on the shape of the probability distribution.</Literal>
</AnnotationAssertion>
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<AnnotationProperty IRI="http://purl.obolibrary.org/obo/IAO_0000117"/>
<IRI>obo:STATO_XXXX</IRI>
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Expand All @@ -22284,5 +22368,5 @@ http://stat.ethz.ch/R-manual/R-patched/library/stats/html/binom.test.html</Liter



<!-- Generated by the OWL API (version 3.4.2) http://owlapi.sourceforge.net -->
<!-- Generated by the OWL API (version 3.5.0) http://owlapi.sourceforge.net -->

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