jemris version number 2.9.2 #6
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| # This starter workflow is for a CMake project running on a single platform. There is a different starter workflow if you need cross-platform coverage. | |
| # See: https://github.com/actions/starter-workflows/blob/main/ci/cmake-multi-platform.yml | |
| name: CI Build | |
| permissions: | |
| checks: write | |
| on: | |
| push: | |
| branches: ["master"] | |
| pull_request: | |
| branches: ["master"] | |
| env: | |
| # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.) | |
| BUILD_TYPE: Release | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-22.04] # , macos-12, ubuntu-20.04, | |
| runs-on: ${{ matrix.os }} | |
| # The CMake configure and build commands are platform agnostic and should work equally well on Windows or Mac. | |
| # You can convert this to a matrix build if you need cross-platform coverage. | |
| # See: https://docs.github.com/en/free-pro-team@latest/actions/learn-github-actions/managing-complex-workflows#using-a-build-matrix | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies linux | |
| if: runner.os == 'Linux' | |
| run: sudo apt update && sudo apt install libxerces-c-dev libsundials-dev libginac-dev ginac-tools libginac-dev libginac11 libhdf5-dev libismrmrd-dev mpi-default-bin libboost-all-dev | |
| - name: Install dependencies MacOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)" | |
| #- name: Copy ginac excompiler # This is highly fragile | |
| # run: cp /lib/*/ginac/ginac-excompiler /usr/bin/ginac-excompiler | |
| - name: Configure CMake | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DSKIP_CONDA=1 | |
| - name: Build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --parallel 3 --config ${{env.BUILD_TYPE}} | |
| - name: Test | |
| env: | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 # allows running mpi as root | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 # allows running mpi as root | |
| OMPI_MCA_rmaps_base_oversubscribe: true # allows oversubscription for mpi test | |
| working-directory: ${{github.workspace}}/build | |
| #run: chmod u+x ./sanityck && ./sanityck ../share/examples 2 | |
| # Execute tests defined by the CMake configuration. | |
| # See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail | |
| run: ctest -C ${{env.BUILD_TYPE}} --output-on-failure --output-junit ${{github.workspace}}/build/jemris-sanitycheck-test.xml | |
| # - name: Publish Test Report | |
| # uses: mikepenz/action-junit-report@v4 | |
| # if: success() || failure() # always run even if the previous step fails | |
| # with: | |
| # report_paths: '${{github.workspace}}/build/test.xml' | |
| - name: Copy Test Results | |
| if: always() | |
| run: | | |
| cp -Lpr ${{github.workspace}}/build/jemris-sanitycheck-test.xml test-results.xml | |
| shell: bash | |
| - name: Publish Test Results | |
| uses: EnricoMi/publish-unit-test-result-action@v2 | |
| if: always() | |
| with: | |
| files: | | |
| test-results.xml | |
| - name: Generate package | |
| working-directory: ${{github.workspace}}/build | |
| run: | | |
| mkdir -p final_packages && cpack -G TBZ2 -B final_packages | |
| - name: Store results as artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: jemris-package | |
| path: | | |
| ${{github.workspace}}/build/final_packages/*.tar.bz2 |