de-anonymized for publication

JannisCodes · Nov 13, 2024 · 70dee16 · 70dee16
1 parent f4b4595
commit 70dee16
Show file tree

Hide file tree

Showing 12 changed files with 147 additions and 139 deletions.
diff --git a/README.md b/README.md
@@ -1,11 +1,11 @@
 # Feature-Based Clustering of Psychological Time Series
 
 [![License: CC BY 4.0](https://img.shields.io/badge/License-CC_BY_4.0-lightgrey.svg)](https://creativecommons.org/licenses/by/4.0/)
-[![Version](https://badge.fury.io/gh/tterb%2FHyde.svg)](https://en.wikipedia.org/wiki/Software_versioning)
+![GitHub Release](https://img.shields.io/github/v/release/JannisCodes/migration-trajectories?label=version)
 [![minimal R version](https://img.shields.io/badge/R%3E%3D-4.1.1-6666ff.svg)](https://cran.r-project.org/)
 [![python version](https://img.shields.io/badge/python-v3.10.6-blue)](https://www.python.org/downloads/release/python-3106/)
 
-Welcome to the GitHub Repository for the 'Migration Trajectories' Project.
+Welcome to the GitHub Repository for the 'Migration Trajectories' Project. This repository accompanies the publication "_A Gentle Introduction and Application of Feature-Based Clustering with Psychological Time Series_" in [Multivariate Behavioral Research](https://www.tandfonline.com/toc/hmbr20/current).
 
 This repository brings together the full manuscript (synchronized from Overleaf) as well as all data sets and their analysis markdown files (syncronized from a local RStudio instance in RMarkdown files).
 

diff --git a/renv.lock b/renv.lock
@@ -67,7 +67,7 @@
     },
     "Hmisc": {
       "Package": "Hmisc",
-      "Version": "4.7-0",
+      "Version": "5.2-0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "d6b38998466629deb0346b1feb594283",
@@ -92,7 +92,7 @@
     },
     "MASS": {
       "Package": "MASS",
-      "Version": "7.3-57",
+      "Version": "7.3-61",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "71476c1d88d1ebdf31580e5a257d5d31",
@@ -520,7 +520,7 @@
     },
     "cli": {
       "Package": "cli",
-      "Version": "3.3.0",
+      "Version": "3.6.3",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "23abf173c2b783dcc43379ab9bba00ee",
@@ -686,7 +686,7 @@
     },
     "devtools": {
       "Package": "devtools",
-      "Version": "2.4.3",
+      "Version": "2.4.5",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "fc35e13bb582e5fe6f63f3d647a4cbe5",
@@ -860,7 +860,7 @@
     },
     "fastmap": {
       "Package": "fastmap",
-      "Version": "1.1.0",
+      "Version": "1.2.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "77bd60a6157420d4ffa93b27cf6a58b8",
@@ -889,7 +889,7 @@
     },
     "fs": {
       "Package": "fs",
-      "Version": "1.5.2",
+      "Version": "1.6.5",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "7c89603d81793f0d5486d91ab1fc6f1d",
@@ -978,7 +978,7 @@
     },
     "ggplot2": {
       "Package": "ggplot2",
-      "Version": "3.3.6",
+      "Version": "3.5.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "0fb26d0674c82705c6b701d1a61e02ea",
@@ -1126,7 +1126,7 @@
     },
     "haven": {
       "Package": "haven",
-      "Version": "2.5.0",
+      "Version": "2.5.4",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "e3058e4ac77f4fa686f68a1838d5b715",
@@ -1203,7 +1203,7 @@
     },
     "htmltools": {
       "Package": "htmltools",
-      "Version": "0.5.2",
+      "Version": "0.5.8.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "526c484233f42522278ab06fb185cb26",
@@ -1253,7 +1253,7 @@
     },
     "igraph": {
       "Package": "igraph",
-      "Version": "1.3.2",
+      "Version": "2.1.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "48e890b2ccaeb5cdce18f14781ae76d6",
@@ -1292,15 +1292,15 @@
     },
     "isoband": {
       "Package": "isoband",
-      "Version": "0.2.5",
+      "Version": "0.2.7",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "7ab57a6de7f48a8dc84910d1eca42883",
       "Requirements": []
     },
     "jpeg": {
       "Package": "jpeg",
-      "Version": "0.1-9",
+      "Version": "0.1-10",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "441ee36360a57b363f4fa3df0c364630",
@@ -1318,7 +1318,7 @@
     },
     "jsonlite": {
       "Package": "jsonlite",
-      "Version": "1.8.0",
+      "Version": "1.8.9",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "d07e729b27b372429d42d24d503613a0",
@@ -1421,7 +1421,7 @@
     },
     "lifecycle": {
       "Package": "lifecycle",
-      "Version": "1.0.1",
+      "Version": "1.0.4",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "a6b6d352e3ed897373ab19d8395c98d0",
@@ -1679,7 +1679,7 @@
     },
     "nnet": {
       "Package": "nnet",
-      "Version": "7.3-17",
+      "Version": "7.3-19",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "cb1d8d9f300a7e536b89c8a88c53f610",
@@ -1855,7 +1855,7 @@
     },
     "pkgload": {
       "Package": "pkgload",
-      "Version": "1.3.0",
+      "Version": "1.4.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "4b20f937a363c78a5730265c1925f54a",
@@ -2171,7 +2171,7 @@
     },
     "rlang": {
       "Package": "rlang",
-      "Version": "1.0.3",
+      "Version": "1.1.4",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "9103a8f74b2114a5ed1136b471d8feca",
@@ -2211,7 +2211,7 @@
     },
     "roxygen2": {
       "Package": "roxygen2",
-      "Version": "7.2.0",
+      "Version": "7.3.2",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "b390c1d54fcd977cda48588e6172daba",
@@ -2269,7 +2269,7 @@
     },
     "rversions": {
       "Package": "rversions",
-      "Version": "2.1.1",
+      "Version": "2.1.2",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "f88fab00907b312f8b23ec13e2d437cb",
@@ -2280,7 +2280,7 @@
     },
     "rvest": {
       "Package": "rvest",
-      "Version": "1.0.2",
+      "Version": "1.0.4",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "bb099886deffecd6f9b298b7d4492943",
@@ -2310,7 +2310,7 @@
     },
     "scales": {
       "Package": "scales",
-      "Version": "1.2.0",
+      "Version": "1.3.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "6e8750cdd13477aa440d453da93d5cac",
@@ -2348,7 +2348,7 @@
     },
     "sjPlot": {
       "Package": "sjPlot",
-      "Version": "2.8.10",
+      "Version": "2.8.16",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "a1c3b806dea3a10345d5fb584344c78a",
@@ -2458,7 +2458,7 @@
     },
     "survival": {
       "Package": "survival",
-      "Version": "3.3-1",
+      "Version": "3.7-0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "f6189c70451d3d68e0d571235576e833",
@@ -2476,7 +2476,7 @@
     },
     "testthat": {
       "Package": "testthat",
-      "Version": "3.1.4",
+      "Version": "3.2.1.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "f76c2a02d0fdc24aa7a47ea34261a6e3",
@@ -2521,7 +2521,7 @@
     },
     "tidyr": {
       "Package": "tidyr",
-      "Version": "1.2.0",
+      "Version": "1.3.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "d8b95b7fee945d7da6888cf7eb71a49c",
@@ -2555,7 +2555,7 @@
     },
     "tidyverse": {
       "Package": "tidyverse",
-      "Version": "1.3.1",
+      "Version": "2.0.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "fc4c72b6ae9bb283416bd59a3303bbab",
@@ -2613,7 +2613,7 @@
     },
     "usethis": {
       "Package": "usethis",
-      "Version": "2.1.6",
+      "Version": "3.0.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "a67a22c201832b12c036cc059f1d137d",
@@ -2657,7 +2657,7 @@
     },
     "vctrs": {
       "Package": "vctrs",
-      "Version": "0.4.1",
+      "Version": "0.6.5",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "8b54f22e2a58c4f275479c92ce041a57",
@@ -2669,7 +2669,7 @@
     },
     "viridis": {
       "Package": "viridis",
-      "Version": "0.6.2",
+      "Version": "0.6.5",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "ee96aee95a7a563e5496f8991e9fde4b",
@@ -2773,7 +2773,7 @@
     },
     "xml2": {
       "Package": "xml2",
-      "Version": "1.3.3",
+      "Version": "1.3.6",
       "Source": "Repository",
       "Repository": "CRAN",
       "Hash": "40682ed6a969ea5abfd351eb67833adc",

diff --git a/tutorial/01-input-variables.qmd b/tutorial/01-input-variables.qmd
@@ -43,7 +43,7 @@ For our illustration, we include 12 variables that were measured as part of the
 
 ### Import the raw data
 
-We begin by importing the raw data as well as the variable meta data. Both of these data files are available as part of <a href="https://osf.io/j8dzv/?view_only=c765efa51e6545e588b29999611eb789" target="_blank">our OSF repository</a>. To ensure the privacy and confidentiality of the study participants, we took a number of steps to pre-process the data:
+We begin by importing the raw data as well as the variable meta data. Both of these data files are available as part of <a href="https://doi.org/10.17605/OSF.IO/J8DZV" target="_blank">our OSF repository</a>. To ensure the privacy and confidentiality of the study participants, we took a number of steps to pre-process the data:
 
 - consistent naming
 - key variables only (participant privacy)

diff --git a/tutorial/06-validation-analyses.qmd b/tutorial/06-validation-analyses.qmd
@@ -889,7 +889,7 @@ We allow users to try out different combinations of dimensionality reduction alg
 If you would like to explore the different alternative models, you can follow the following link:
 
 <div class="d-flex justify-content-center">
-  <a class="btn btn-primary btn-lg" href="https://jannis-kreienkamp.shinyapps.io/tsFeatureClustR/" target="_blank" role="button">To the Web App</a>
+  <a class="btn btn-primary btn-lg" href="https://tsfeatureclustr.shinyapps.io/webapp/" target="_blank" role="button">To the Web App</a>
 </div>
 
 

diff --git a/tutorial/_freeze/01-input-variables/execute-results/html.json b/tutorial/_freeze/01-input-variables/execute-results/html.json