use API lock in helper function ccalls

src/api/helpers.jl

@@ -626,9 +626,12 @@ Deprecated HDF5 function. Use [`h5o_get_info`](@ref) or [`h5o_get_native_info`](
 See `libhdf5` documentation for [`H5Oget_info1`](https://portal.hdfgroup.org/display/HDF5/H5O_GET_INFO1).
 """
 function h5o_get_info1(object_id, buf)
-    var"#status#" = ccall(
-        (:H5Oget_info1, libhdf5), herr_t, (hid_t, Ptr{H5O_info_t}), object_id, buf
-    )
+    lock(liblock)
+    var"#status#" = try
+        ccall((:H5Oget_info1, libhdf5), herr_t, (hid_t, Ptr{H5O_info_t}), object_id, buf)
+    finally
+        unlock(liblock)
+    end
     var"#status#" < 0 && @h5error("Error getting object info")
     return nothing
 end
@@ -876,7 +879,12 @@ end
 See `libhdf5` documentation for [`H5P_GET_CLASS_NAME`](https://portal.hdfgroup.org/display/HDF5/H5P_GET_CLASS_NAME).
 """
 function h5p_get_class_name(pcid)
-    pc = ccall((:H5Pget_class_name, libhdf5), Ptr{UInt8}, (hid_t,), pcid)
+    lock(liblock)
+    pc = try
+        ccall((:H5Pget_class_name, libhdf5), Ptr{UInt8}, (hid_t,), pcid)
+    finally
+        unlock(liblock)
+    end
     if pc == C_NULL
         @h5error("Error getting class name")
     end
@@ -987,7 +995,12 @@ end
 See `libhdf5` documentation for [`H5Oopen`](https://portal.hdfgroup.org/display/HDF5/H5T_GET_MEMBER_NAME).
 """
 function h5t_get_member_name(type_id, index)
-    pn = ccall((:H5Tget_member_name, libhdf5), Ptr{UInt8}, (hid_t, Cuint), type_id, index)
+    lock(liblock)
+    pn = try
+        ccall((:H5Tget_member_name, libhdf5), Ptr{UInt8}, (hid_t, Cuint), type_id, index)
+    finally
+        unlock(liblock)
+    end
     if pn == C_NULL
         @h5error("Error getting name of compound datatype member #$index")
     end
@@ -1002,7 +1015,12 @@ end
 See `libhdf5` documentation for [`H5Oopen`](https://portal.hdfgroup.org/display/HDF5/H5T_GET_TAG).
 """
 function h5t_get_tag(type_id)
-    pc = ccall((:H5Tget_tag, libhdf5), Ptr{UInt8}, (hid_t,), type_id)
+    lock(liblock)
+    pc = try
+        ccall((:H5Tget_tag, libhdf5), Ptr{UInt8}, (hid_t,), type_id)
+    finally
+        unlock(liblock)
+    end
     if pc == C_NULL
         @h5error("Error getting opaque tag")
     end

test/apilock.jl

@@ -0,0 +1,12 @@
+using Pkg, Test
+@testset "issue1179" begin
+    @test try
+        run(
+            `$(Base.julia_cmd()) --project=$(dirname(Pkg.project().path)) -t 6 $(joinpath(@__DIR__, "issue1179.jl"))`
+        )
+        true
+    catch err
+        @info err
+        false
+    end
+end

test/issue1179.jl

@@ -0,0 +1,13 @@
+using HDF5
+
+T = ComplexF64
+# T = Float64 # OK
+sizes = (100, 100, 100)
+Threads.@threads for i in 1:Threads.nthreads()
+    h5open("file$i.hdf5", "w") do h5
+        d = create_dataset(h5, "rand", T, sizes)
+        for n in 1:sizes[3]
+            d[:, :, n] = rand(T, sizes[1:2])
+        end
+    end
+end

test/runtests.jl

@@ -92,6 +92,8 @@ end
         @debug "virtual datasets"
         include("virtual_dataset.jl")
     end
+    @debug "api lock"
+    include("apilock.jl")
 
     # basic MPI tests, for actual parallel tests we need to run in MPI mode
     include("mpio.jl")