Making Genomic Surveillance Deliver: A Lineage Classification and Nomenclature System to Inform Rabies Elimination

K. Campbell, R.J. Gifford, J. Singer, V. Hill, A. O’Toole, A. Rambaut, K. Hampson, K. Brunker

Scripts and data for rabies lineage designation of the Cosmopolitan clade using MAD DOG.

The MAD DOG tool is publically available as a command line tool and an R package:

Figures compiled for the paper are in Figures/

Figures and outputs generated for different scales/sequence lengths are in Cosmo_WGS, Cosmo_N and Tanz_WGS.

Full details can be found in the paper at: https://doi.org/10.1101/2021.10.13.464180