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adeschen committed Sep 27, 2021
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11 changes: 9 additions & 2 deletions DESCRIPTION
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Expand Up @@ -5,15 +5,22 @@ Date: 2021-02-17
Title: Copy Number Variant Metrics
Description: The CNVMetrics package calculates similarity metrics to
facilitate copy number variant comparison among samples and/or methods.
Similarity metrics can be employed to compare CNV profiles of genetically
unrelated samples as well as those with a common genetic background.
Some metrics are based on the shared amplified/deleted regions while other
metrics rely on the level of amplification/deletion. Finally,
a visualization tool is provided to explore resulting metrics.
metrics rely on the level of amplification/deletion.
The data type used as input is a plain text file containing the genomic
position of the copy number variations, as well as the status and/or
the log2 ratio values.
Finally, a visualization tool is provided to explore resulting metrics.
Authors@R: c(person("Astrid", "Deschênes", email = "[email protected]",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-7846-6749")),
person("Pascal", "Belleau", email = "[email protected]",
role = c("aut"),
comment = c(ORCID = "0000-0002-0802-1071")),
person(given="David A.", family="Tuveson",
email="[email protected]", role = c("aut")),
person("Alexander", "Krasnitz", email = "[email protected]",
role = c("aut")))
Encoding: UTF-8
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3 changes: 2 additions & 1 deletion README.md
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Expand Up @@ -24,7 +24,8 @@ If you use this package for a publication, we would ask you to cite the followin
## Authors ##

[Astrid Deschênes](http://ca.linkedin.com/in/astriddeschenes "Astrid Deschênes"),
[Pascal Belleau](http://ca.linkedin.com/in/pascalbelleau "Pascal Belleau") and
[Pascal Belleau](http://ca.linkedin.com/in/pascalbelleau "Pascal Belleau"),
[David A. Tuveson](http://tuvesonlab.labsites.cshl.edu/ "David A. Tuveson") and
[Alexander Krasnitz](https://www.cshl.edu/research/faculty-staff/alexander-krasnitz/ "Alexander Krasnitz")


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13 changes: 0 additions & 13 deletions inst/CITATION
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Expand Up @@ -38,19 +38,6 @@ pkgTextVer <- function(pkg) {
}

c(
bibentry(bibtype="manual",
title = pkgTitle('CNVMetrics'),
author = personList(
as.person("Astrid Deschênes"),
as.person("Pascal Belleau"),
as.person("Alexander Krasnitz")
),
year = format(Sys.Date(), "%Y"),
url = "https://krasnitzlab.github.io/CNVMetrics",
note = pkgVer('CNVMetrics'),
doi = '',
textVersion = pkgTextVer('CNVMetrics')
),
bibentry(bibtype="manual",
title = "CNVMetrics package: Quantifying similarity between copy number profiles [version 1; not peer reviewed]",
author = personList(
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