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R Package to compare copy number variant (CNV) results from multiple samples/methods

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KrasnitzLab/CNVMetrics

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R-CMD-check-bio codecov License: Artistic-2.0

CNVMetrics

The CNVMetrics package offers multiple quantitative metrics of similarity between copy number profiles. Among these are metrics based on CNV status calls only (amplification/deletion status) or on the level of amplification/deletion. In addition, a visualization tool is provided to explore resulting metrics.

Authors

Astrid Deschênes, Pascal Belleau and Alexander Krasnitz

License

This package and the underlying CNVMetrics code are distributed under the Artistic license 2.0. You are free to use and redistribute this software.

For more information on Artistic 2.0 License see http://opensource.org/licenses/Artistic-2.0

Documentation

CNVMetrics Website

Installation

To install the latest version accessible, the devtools package is required.

 ## Load required package
 library(devtools)

 ## Install the latest version of CNVMetrics
 devtools::install_github('KrasnitzLab/CNVMetrics')

Bugs/Feature requests

If you have any bugs or feature requests, let us know.

Thanks!