Merge branch 'feature/sunadjoint-core-modules' into feature/sunadjoin…

…t-arkode
LLNL · Jan 22, 2025 · ab50e50 · ab50e50
2 parents 9aaf7f1 + 4a5779a
commit ab50e50
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diff --git a/.github/PULL_REQUEST_TEMPLATE/release.md b/.github/PULL_REQUEST_TEMPLATE/release.md
@@ -27,7 +27,7 @@ This is a list of tasks that need to be done before a SUNDIALS release.
    * `doc/shared/History.rst`
    * `doc/shared/sundials.bib`
    * `doc/sundials/biblio.bib`
-   * `scripts/tarscript`
+   * `scripts/tarscript.sh`
 
    The following files are no longer maintaianed:
 

diff --git a/.github/workflows/build-ci-containers-e4s.yml b/.github/workflows/build-ci-containers-e4s.yml
@@ -26,7 +26,7 @@ jobs:
         username: ${{ github.actor }}
         password: ${{ secrets.GITHUB_TOKEN }}
     - name: Build and push Docker images
-      uses: docker/build-push-action@v6.11.0
+      uses: docker/build-push-action@v6.12.0
       with:
           context: "./docker/sundials-ci/e4s-base"
           build-args: e4s_version=22.05
@@ -56,7 +56,7 @@ jobs:
         username: ${{ github.actor }}
         password: ${{ secrets.GITHUB_TOKEN }}
     - name: Build and push Docker images
-      uses: docker/build-push-action@v6.11.0
+      uses: docker/build-push-action@v6.12.0
       with:
           context: "./docker/sundials-ci/e4s-quarterly"
           build-args: spack_yaml=./int${{ matrix.indexsize }}-${{ matrix.precision }}/spack.yaml

diff --git a/.github/workflows/build-ci-containers-nightly.yml b/.github/workflows/build-ci-containers-nightly.yml
@@ -32,7 +32,7 @@ jobs:
         username: ${{ github.actor }}
         password: ${{ secrets.GITHUB_TOKEN }}
     - name: Build and push Docker images
-      uses: docker/build-push-action@v6.11.0
+      uses: docker/build-push-action@v6.12.0
       with:
           context: "./docker/sundials-ci/spack-nightly"
           build-args: spack_yaml=./int${{ matrix.indexsize }}-${{ matrix.precision }}/spack.yaml

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
@@ -17,7 +17,7 @@
 # Modifications to this file have been made under the folllowing copyright.
 # -----------------------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/.gitlab/custom-jobs-and-variables.yml b/.gitlab/custom-jobs-and-variables.yml
@@ -17,7 +17,7 @@
 # Modifications to this file have been made under the folllowing copyright.
 # -----------------------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/.gitlab/jobs/dane.yml b/.gitlab/jobs/dane.yml
@@ -6,7 +6,7 @@
 ##############################################################################
 # ------------------------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/.gitlab/jobs/tioga.yml b/.gitlab/jobs/tioga.yml
@@ -6,7 +6,7 @@
 ##############################################################################
 # ------------------------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/.gitlab/subscribed-pipelines.yml b/.gitlab/subscribed-pipelines.yml
@@ -17,7 +17,7 @@
 # Modifications to this file have been made under the folllowing copyright.
 # -----------------------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -3,7 +3,7 @@
 #                and Slaven Peles @ LLNL
 # ---------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/LICENSE b/LICENSE
@@ -1,6 +1,6 @@
 BSD 3-Clause License
 
-Copyright (c) 2002-2024, Lawrence Livermore National Security and Southern Methodist University.
+Copyright (c) 2002-2025, Lawrence Livermore National Security and Southern Methodist University.
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without

diff --git a/benchmarks/CMakeLists.txt b/benchmarks/CMakeLists.txt
@@ -2,7 +2,7 @@
 # Programmer(s): Cody J. Balos @ LLNL
 # ---------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/benchmarks/advection_reaction_3D/CMakeLists.txt b/benchmarks/advection_reaction_3D/CMakeLists.txt
@@ -2,7 +2,7 @@
 # Programmer(s): Daniel R. Reynolds @ SMU
 # ---------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/benchmarks/advection_reaction_3D/kokkos/CMakeLists.txt b/benchmarks/advection_reaction_3D/kokkos/CMakeLists.txt
@@ -2,7 +2,7 @@
 # Programmer(s):  Daniel R. Reynolds @ SMU
 # ---------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/benchmarks/advection_reaction_3D/kokkos/ParallelGrid.hpp b/benchmarks/advection_reaction_3D/kokkos/ParallelGrid.hpp
@@ -3,7 +3,7 @@
  *                Cody J. Balos @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/kokkos/advection_reaction_3D.cpp b/benchmarks/advection_reaction_3D/kokkos/advection_reaction_3D.cpp
@@ -3,7 +3,7 @@
  *                David J. Gardner, Cody J. Balos @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/kokkos/advection_reaction_3D.hpp b/benchmarks/advection_reaction_3D/kokkos/advection_reaction_3D.hpp
@@ -3,7 +3,7 @@
  *                David J. Gardner, Cody J. Balos @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/kokkos/arkode_driver.cpp b/benchmarks/advection_reaction_3D/kokkos/arkode_driver.cpp
@@ -2,7 +2,7 @@
  * Programmer(s): David J. Gardner, Cody J. Balos @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/kokkos/check_retval.h b/benchmarks/advection_reaction_3D/kokkos/check_retval.h
@@ -2,7 +2,7 @@
  * Programmer(s): Cody J. Balos @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/kokkos/cvode_driver.cpp b/benchmarks/advection_reaction_3D/kokkos/cvode_driver.cpp
@@ -2,7 +2,7 @@
  * Programmer(s): Cody J. Balos @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/kokkos/ida_driver.cpp b/benchmarks/advection_reaction_3D/kokkos/ida_driver.cpp
@@ -2,7 +2,7 @@
  * Programmer(s): Cody J. Balos @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/kokkos/rhs3D.hpp b/benchmarks/advection_reaction_3D/kokkos/rhs3D.hpp
@@ -3,7 +3,7 @@
  *                David J. Gardner, Cody J. Balos @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/raja/CMakeLists.txt b/benchmarks/advection_reaction_3D/raja/CMakeLists.txt
@@ -3,7 +3,7 @@
 #                 Daniel R. Reynolds @ SMU
 # ---------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/benchmarks/advection_reaction_3D/raja/ParallelGrid.hpp b/benchmarks/advection_reaction_3D/raja/ParallelGrid.hpp
@@ -3,7 +3,7 @@
  *                Daniel R. Reynolds @ SMU
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/raja/advection_reaction_3D.cpp b/benchmarks/advection_reaction_3D/raja/advection_reaction_3D.cpp
@@ -3,7 +3,7 @@
  *                Daniel R. Reynolds @ SMU
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/raja/advection_reaction_3D.hpp b/benchmarks/advection_reaction_3D/raja/advection_reaction_3D.hpp
@@ -3,7 +3,7 @@
  *                Daniel R. Reynolds @ SMU
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/raja/arkode_driver.cpp b/benchmarks/advection_reaction_3D/raja/arkode_driver.cpp
@@ -2,7 +2,7 @@
  * Programmer(s): David J. Gardner, Cody J. Balos @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/raja/backends.hpp b/benchmarks/advection_reaction_3D/raja/backends.hpp
@@ -2,7 +2,7 @@
  * Programmer(s): Cody J. Balos @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/raja/check_retval.h b/benchmarks/advection_reaction_3D/raja/check_retval.h
@@ -2,7 +2,7 @@
  * Programmer(s): Cody J. Balos @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/raja/cvode_driver.cpp b/benchmarks/advection_reaction_3D/raja/cvode_driver.cpp
@@ -2,7 +2,7 @@
  * Programmer(s): Cody J. Balos @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/raja/ida_driver.cpp b/benchmarks/advection_reaction_3D/raja/ida_driver.cpp
@@ -2,7 +2,7 @@
  * Programmer(s): Cody J. Balos @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/raja/rhs3D.hpp b/benchmarks/advection_reaction_3D/raja/rhs3D.hpp
@@ -3,7 +3,7 @@
  *                Daniel R. Reynolds @ SMU
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/advection_reaction_3D/scripts/compare_error.py b/benchmarks/advection_reaction_3D/scripts/compare_error.py
@@ -1,7 +1,7 @@
 #!/usr/bin/env python3
 # -----------------------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/benchmarks/advection_reaction_3D/scripts/compute_error.py b/benchmarks/advection_reaction_3D/scripts/compute_error.py
@@ -1,7 +1,7 @@
 #!/usr/bin/env python3
 # -----------------------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/benchmarks/advection_reaction_3D/scripts/make_plots.py b/benchmarks/advection_reaction_3D/scripts/make_plots.py
@@ -3,7 +3,7 @@
 # Programmer(s):  Daniel R. Reynolds @ SMU
 # ------------------------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/benchmarks/advection_reaction_3D/scripts/pickle_solution_output.py b/benchmarks/advection_reaction_3D/scripts/pickle_solution_output.py
@@ -1,7 +1,7 @@
 #!/usr/bin/env python3
 # -----------------------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/benchmarks/diffusion_2D/CMakeLists.txt b/benchmarks/diffusion_2D/CMakeLists.txt
@@ -2,7 +2,7 @@
 # Programmer(s): David J. Gardner @ LLNL
 # ------------------------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/benchmarks/diffusion_2D/diffusion_2D.cpp b/benchmarks/diffusion_2D/diffusion_2D.cpp
@@ -2,7 +2,7 @@
  * Programmer(s): David J. Gardner @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/diffusion_2D/diffusion_2D.hpp b/benchmarks/diffusion_2D/diffusion_2D.hpp
@@ -2,7 +2,7 @@
  * Programmer(s): David J. Gardner @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/diffusion_2D/main_arkode.cpp b/benchmarks/diffusion_2D/main_arkode.cpp
@@ -2,7 +2,7 @@
  * Programmer(s): David J. Gardner @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/diffusion_2D/main_cvode.cpp b/benchmarks/diffusion_2D/main_cvode.cpp
@@ -2,7 +2,7 @@
  * Programmer(s): David J. Gardner @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/diffusion_2D/main_ida.cpp b/benchmarks/diffusion_2D/main_ida.cpp
@@ -2,7 +2,7 @@
  * Programmer(s): David J. Gardner @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *

diff --git a/benchmarks/diffusion_2D/mpi_gpu/CMakeLists.txt b/benchmarks/diffusion_2D/mpi_gpu/CMakeLists.txt
@@ -2,7 +2,7 @@
 # Programmer(s): David J. Gardner @ LLNL
 # ------------------------------------------------------------------------------
 # SUNDIALS Copyright Start
-# Copyright (c) 2002-2024, Lawrence Livermore National Security
+# Copyright (c) 2002-2025, Lawrence Livermore National Security
 # and Southern Methodist University.
 # All rights reserved.
 #

diff --git a/benchmarks/diffusion_2D/mpi_gpu/buffers.cpp b/benchmarks/diffusion_2D/mpi_gpu/buffers.cpp
@@ -2,7 +2,7 @@
  * Programmer(s): David J. Gardner @ LLNL
  * -----------------------------------------------------------------------------
  * SUNDIALS Copyright Start
- * Copyright (c) 2002-2024, Lawrence Livermore National Security
+ * Copyright (c) 2002-2025, Lawrence Livermore National Security
  * and Southern Methodist University.
  * All rights reserved.
  *