MIP and MIP masks can be found in the sample data folder. Tomogram files can be found at the following link https://figshare.com/articles/media/RI_Tomogram_TIFF_file_sample_data/23547087
In segmenting_3d_cell_v5.m:
- Assign path to tomogram files to phase_folder_3d variable
- Assign path to mask files to mask_folder variable
- Assign path to saving folder to saving_folder variable