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Lucas04-nhr committed Dec 13, 2023
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\date{}

\begin{document}

\pagenumbering{Roman}
\hypertarget{review-of-the-course-r-for-data-science-part-01talk-01-04}{%
\section{Review of the course ``R for Data Science'' Part 01(Talk
01\textasciitilde{}
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This work is licensed under CC BY-NC-SA 4.0

\tableofcontents

\newpage
\setcounter{page}{1}
\pagenumbering{arabic}
\hypertarget{multi-omics-data-analysis-and-visualisation-1}{%
\section{Multi-omics data analysis and visualisation,
\#1}\label{multi-omics-data-analysis-and-visualisation-1}}
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\date{}

\begin{document}

\pagenumbering{Roman}
\hypertarget{review-of-the-course-r-for-data-science-part-02talk-05-08}{%
\section{Review of the course ``R for Data Science'' Part 02(Talk
05\textasciitilde{}
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\begin{center}\rule{0.5\linewidth}{0.5pt}\end{center}

\tableofcontents

\newpage
\setcounter{page}{1} % 将页码计数器设置为 1
\pagenumbering{arabic} % 使用阿拉伯数字重新编号页码
\hypertarget{r-for-bioinformatics-data-wrangler-part-1}{%
\section{R for bioinformatics, data wrangler, part
1}\label{r-for-bioinformatics-data-wrangler-part-1}}
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\date{}

\begin{document}

\pagenumbering{Roman}
\hypertarget{review-of-the-course-r-for-data-science-part-03talk-09-12}{%
\section{Review of the course ``R for Data Science'' Part 03(Talk
09\textasciitilde{}
Expand All @@ -137,7 +137,10 @@ \section{Review of the course ``R for Data Science'' Part 03(Talk
This work is licensed under CC BY-NC-SA 4.0

\begin{center}\rule{0.5\linewidth}{0.5pt}\end{center}
\tableofcontents

\newpage
\pagenumbering{arabic}
\hypertarget{r-for-bioinformatics-data-visualisation}{%
\section{R for bioinformatics, data
visualisation}\label{r-for-bioinformatics-data-visualisation}}
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24 changes: 14 additions & 10 deletions LaTeX/EN/REVIEW_01/REVIEW_01.tex
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\date{}

\begin{document}

\pagenumbering{Roman}
\hypertarget{review-of-the-course-r-for-data-science-part-01talk-01-04}{%
\section{Review of the course ``R for Data Science'' Part 01(Talk
01\textasciitilde{}
Expand All @@ -120,6 +120,10 @@ \section{Review of the course ``R for Data Science'' Part 01(Talk

This work is licensed under CC BY-NC-SA 4.0

\tableofcontents

\newpage
\pagenumbering{arabic}
\hypertarget{multi-omics-data-analysis-and-visualisation-1}{%
\section{Multi-omics data analysis and visualisation,
\#1}\label{multi-omics-data-analysis-and-visualisation-1}}
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\begin{Highlighting}[]
\CommentTok{\# (There\textquotesingle{}s already some data in workspace)}

\SpecialCharTok{$}\NormalTok{ m}
\SpecialCharTok{\$}\NormalTok{ m}
\SpecialCharTok{\textgreater{}}\NormalTok{ (List the content of matrix }\StringTok{"m"}\NormalTok{)}

\SpecialCharTok{$}\NormalTok{ m[}\DecValTok{1}\NormalTok{, ]}
\SpecialCharTok{\$}\NormalTok{ m[}\DecValTok{1}\NormalTok{, ]}
\SpecialCharTok{\textgreater{}}\NormalTok{ (List the first row of matrix }\StringTok{\textquotesingle{}m\textquotesingle{}}\NormalTok{)}

\SpecialCharTok{$}\NormalTok{ m[}\DecValTok{1}\SpecialCharTok{:}\DecValTok{2}\NormalTok{, ]}
\SpecialCharTok{\$}\NormalTok{ m[}\DecValTok{1}\SpecialCharTok{:}\DecValTok{2}\NormalTok{, ]}
\SpecialCharTok{\textgreater{}}\NormalTok{ (List the first two rows of matrix }\StringTok{\textquotesingle{}m\textquotesingle{}}\NormalTok{)}
\end{Highlighting}
\end{Shaded}
Expand Down Expand Up @@ -721,10 +725,10 @@ \subsubsection{\texorpdfstring{\texttt{data.frame} will do partial
\begin{Shaded}
\begin{Highlighting}[]
\NormalTok{df }\OtherTok{=} \FunctionTok{data.frame}\NormalTok{(}\AttributeTok{abc =} \DecValTok{1}\NormalTok{) }
\NormalTok{df}\SpecialCharTok{$}\NormalTok{ab; }\CommentTok{\# Unwanted result ...}
\NormalTok{df}\SpecialCharTok{\$}\NormalTok{ab; }\CommentTok{\# Unwanted result ...}

\NormalTok{df2 }\OtherTok{=} \FunctionTok{tibble}\NormalTok{(}\AttributeTok{abc =} \DecValTok{1}\NormalTok{)}
\NormalTok{df2}\SpecialCharTok{$}\NormalTok{a; }\CommentTok{\# Produce a warning and return NULL}
\NormalTok{df2}\SpecialCharTok{\$}\NormalTok{a; }\CommentTok{\# Produce a warning and return NULL}
\end{Highlighting}
\end{Shaded}

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\NormalTok{res }\OtherTok{=}
\FunctionTok{data.frame}\NormalTok{(responses)}
\CommentTok{\# Sort by level of agreement from strong {-}\textgreater{} weak}
\NormalTok{res}\SpecialCharTok{$}\NormalTok{res }\OtherTok{=}
\NormalTok{res}\SpecialCharTok{\$}\NormalTok{res }\OtherTok{=}
\FunctionTok{factor}\NormalTok{(}
\NormalTok{ res}\SpecialCharTok{$}\NormalTok{res,}
\NormalTok{ res}\SpecialCharTok{\$}\NormalTok{res,}
\AttributeTok{levels =}
\FunctionTok{c}\NormalTok{(}\StringTok{"Strongly Agree"}\NormalTok{, }\StringTok{"Agree"}\NormalTok{, }\StringTok{"Disagree"}\NormalTok{)}
\NormalTok{ )}
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\begin{Shaded}
\begin{Highlighting}[]
\NormalTok{mouse.chr\_10\_12}\SpecialCharTok{$}\NormalTok{Chromosome.scaffold.name }\OtherTok{=}
\FunctionTok{droplevels}\NormalTok{(mouse.chr\_10\_12}\SpecialCharTok{$}\NormalTok{Chromosome.scaffold.name)}
\NormalTok{mouse.chr\_10\_12}\SpecialCharTok{\$}\NormalTok{Chromosome.scaffold.name }\OtherTok{=}
\FunctionTok{droplevels}\NormalTok{(mouse.chr\_10\_12}\SpecialCharTok{\$}\NormalTok{Chromosome.scaffold.name)}
\end{Highlighting}
\end{Shaded}

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7 changes: 5 additions & 2 deletions LaTeX/EN/REVIEW_02/REVIEW_02.tex
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%
\documentclass[
]{article}
\usepackage{ctex}
\usepackage{geometry}
\geometry{a4paper,left=2.8cm,right=2.8cm,top=3cm,bottom=2.5cm}
\usepackage{amsmath,amssymb}
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\date{}

\begin{document}

\pagenumbering{Roman}
\hypertarget{review-of-the-course-r-for-data-science-part-02talk-05-08}{%
\section{Review of the course ``R for Data Science'' Part 02(Talk
05\textasciitilde{}
Expand All @@ -136,6 +135,10 @@ \section{Review of the course ``R for Data Science'' Part 02(Talk
To reduce the size, all the codes listed will \emph{\textbf{NOT}}
include the output as picture.

\tableofcontents

\newpage
\pagenumbering{arabic}
\hypertarget{r-for-bioinformatics-data-wrangler-part-1}{%
\section{R for bioinformatics, data wrangler, part
1}\label{r-for-bioinformatics-data-wrangler-part-1}}
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