GBS2map

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workflow and tool-set to construct genetic maps from GBS data

needed input:

• demultiplexed GBS sequenced from a mapping population
• reference genome (draft genome)

output:

• markers based on sequences of the reference genome

• genetic map

• sequences anchored to linkage groups

conversion of qtl-objects to ABGgenotyer-input

python Rqtl_2_abh.py path/to/input/qtl.cross.csv path/to/output/abh.input.csv