Merge pull request #36 from carlos-encs/jupyter-script

Jupyter-notebooks script and instructions

src/jupyter.sh

@@ -0,0 +1,25 @@
+#!/encs/bin/tcsh
+
+## Script for https://nag-devops.github.io/speed-hpc/#jupyter-notebooks
+## since it is salloc (or srun) (e.g salloc -p ps --mem=4000 --x11 -t 0-06:00) no need to configure cluster settings because
+## it would choose the proper computational node  
+
+module load singularity/3.10.4/default
+
+# Executing singularity image 
+srun singularity exec -B $PWD\:/speed-pwd,/speed-scratch/$USER\:/my-speed-scratch,/nettemp \
+      --env SHELL=/bin/bash --nv /speed-scratch/nag-public/openiss-cuda-conda-jupyter.sif \
+      /bin/bash -c '/opt/conda/bin/jupyter notebook --no-browser --notebook-dir=/speed-pwd \
+      --ip="*" --port=8888 --allow-root'
+
+## If you receive an error like:   FATAL:container creation failed: exec: "/usr/bin/nvidia-container-cli"
+## remove the parameter: --nv and execute again srun singularity ...
+
+# A token is generated when execution is successful
+
+## [I 09:10:49.547 NotebookApp] Jupyter Notebook 6.5.2 is running at:
+## [I 09:10:49.547 NotebookApp] http://speed-xx.encs.concordia.ca:8888/?token=xxxxxxxxxxxxxxxxxxxx
+## [I 09:10:49.547 NotebookApp]  or http://127.0.0.1:8888/?token=xxxxxxxxxxxxxxxxxxxx
+## [I 09:10:49.547 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
+
+# Continue with the ssh tunnel creation as described in: https://nag-devops.github.io/speed-hpc/#jupyter-notebooks