Merge pull request #242 from cecilehannay/main

update reservation queue through various notebooks
NCAR · Aug 1, 2024 · 4c3af34 · 4c3af34
2 parents bc0fea4 + adfe523
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diff --git a/notebooks/challenge/cam-chem_waccm/exercise_1.ipynb b/notebooks/challenge/cam-chem_waccm/exercise_1.ipynb
@@ -135,10 +135,10 @@
     "**# Change the job queue and account number**\n",
     "\n",
     "**If needed**, change ``job queue`` and ``account number``.<br>\n",
-    "For instance, to run in the queue ``regular`` and the tutorial project number ``UESM0013``\n",
+    "For instance, to run in the queue ``tutorial`` and the tutorial project number ``UESM0013``\n",
     "```  \n",
     "cd $CASEDIR\n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "This step can be redone at anytime in the process. \n",
     "\n",

diff --git a/notebooks/challenge/cam-chem_waccm/exercise_2.ipynb b/notebooks/challenge/cam-chem_waccm/exercise_2.ipynb
@@ -128,10 +128,10 @@
     "**# Change the job queue and account number**\n",
     "\n",
     "**If needed**, change ``job queue`` and ``account number``.<br>\n",
-    "For instance, to run in the queue ``regular`` and the project number ``UESM0013``\n",
+    "For instance, to run in the queue ``tutorial`` and the project number ``UESM0013``\n",
     "```  \n",
     "cd $CASEDIR\n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "This step can be redone at anytime in the process. \n",
     "\n",

diff --git a/notebooks/challenge/cam-chem_waccm/exercise_3.ipynb b/notebooks/challenge/cam-chem_waccm/exercise_3.ipynb
@@ -103,10 +103,10 @@
     "**# Change the job queue and account number**\n",
     "\n",
     "**If needed**, change ``job queue`` and ``account number``.<br>\n",
-    "For instance, to run in the queue ``regular`` and the project number ``UESM0013``\n",
+    "For instance, to run in the queue ``tutorial`` and the project number ``UESM0013``\n",
     "```  \n",
     "cd $CASEDIR\n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "This step can be redone at anytime in the process. \n",
     "\n",

diff --git a/notebooks/challenge/cam/exercise_1.ipynb b/notebooks/challenge/cam/exercise_1.ipynb
@@ -106,10 +106,10 @@
     "**# Change the job queue and account number**\n",
     "\n",
     "If needed, change ``job queue`` and ``account number``.<br>\n",
-    "For instance, to run in the queue ``regular`` and the project number ``UESM0013``. You should use the project number given for this tutorial.\n",
+    "For instance, to run in the queue ``tutorial`` and the project number ``UESM0013``. You should use the project number given for this tutorial.\n",
     "```  \n",
     "cd $CASEDIR\n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "This step can be redone at anytime in the process. \n",
     "\n",

diff --git a/notebooks/challenge/cam/exercise_2.ipynb b/notebooks/challenge/cam/exercise_2.ipynb
@@ -111,10 +111,10 @@
     "**# Change the job queue and account number**\n",
     "\n",
     "If needed, change ``job queue`` and ``account number``.<br>\n",
-    "For instance, to run in the queue ``regular`` and the project number ``UESM0013``. You should use the project number given for this tutorial.\n",
+    "For instance, to run in the queue ``tutorial`` and the project number ``UESM0013``. You should use the project number given for this tutorial.\n",
     "```  \n",
     "cd $CASEDIR\n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "This step can be redone at anytime in the process. \n",
     "\n",

diff --git a/notebooks/challenge/cam/exercise_3.ipynb b/notebooks/challenge/cam/exercise_3.ipynb
@@ -119,10 +119,10 @@
     "**# Change the job queue and account number**\n",
     "\n",
     "If needed, change ``job queue`` and ``account number``.<br>\n",
-    "For instance, to run in the queue ``regular`` and the project number ``UESM0013``\n",
+    "For instance, to run in the queue ``tutorial`` and the project number ``UESM0013``\n",
     "```  \n",
     "cd $CASEDIR\n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "This step can be redone at anytime in the process. \n",
     "\n",

diff --git a/notebooks/challenge/cam/exercise_4.ipynb b/notebooks/challenge/cam/exercise_4.ipynb
@@ -108,10 +108,10 @@
     "**# Change the job queue and account number**\n",
     "\n",
     "If needed, change ``job queue`` and ``account number``.<br>\n",
-    "For instance, to run in the queue ``regular`` and the project number ``UESM0013``. You should use the project number given for this tutorial.\n",
+    "For instance, to run in the queue ``tutorial`` and the project number ``UESM0013``. You should use the project number given for this tutorial.\n",
     "```  \n",
     "cd $CASEDIR\n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "This step can be redone at anytime in the process. \n",
     "\n",

diff --git a/notebooks/challenge/cam/exercise_5.ipynb b/notebooks/challenge/cam/exercise_5.ipynb
@@ -110,10 +110,10 @@
     "**# Change the job queue and account number**\n",
     "\n",
     "If needed, change ``job queue`` and ``account number``.<br>\n",
-    "For instance, to run in the queue ``regular`` and the project number ``UESM0013``. You should use the project number given for this tutorial.\n",
+    "For instance, to run in the queue ``tutorial`` and the project number ``UESM0013``. You should use the project number given for this tutorial.\n",
     "```  \n",
     "cd $CASEDIR\n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "This step can be redone at anytime in the process. \n",
     "\n",

diff --git a/notebooks/challenge/cam/exercise_6.ipynb b/notebooks/challenge/cam/exercise_6.ipynb
@@ -108,10 +108,10 @@
     "**# Change the job queue and account number**\n",
     "\n",
     "If needed, change ``job queue`` and ``account number``.<br>\n",
-    "For instance, to run in the queue ``regular`` and the project number ``UESM0013``. You should use the project number given for this tutorial.\n",
+    "For instance, to run in the queue ``tutorial`` and the project number ``UESM0013``. You should use the project number given for this tutorial.\n",
     "```  \n",
     "cd $CASEDIR\n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "This step can be redone at anytime in the process. \n",
     "\n",

diff --git a/notebooks/challenge/cice/cice_exercise_1.ipynb b/notebooks/challenge/cice/cice_exercise_1.ipynb
@@ -141,7 +141,7 @@
     "and <font face=\"Courier\" color='purple'><strong>account number</strong></font>. \n",
     "For instance:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "<br>\n",
     "\n",

diff --git a/notebooks/challenge/cice/cice_exercise_2.ipynb b/notebooks/challenge/cice/cice_exercise_2.ipynb
@@ -172,7 +172,7 @@
     "and <font face=\"Courier\" color='purple'><strong>account number</strong></font>. \n",
     "For instance:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "<br>\n",
     "\n",

diff --git a/notebooks/challenge/cice/cice_exercise_3.ipynb b/notebooks/challenge/cice/cice_exercise_3.ipynb
@@ -152,7 +152,7 @@
     "and <font face=\"Courier\" color='purple'><strong>account number</strong></font>. \n",
     "For instance:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "<br>\n",
     "\n",

diff --git a/notebooks/challenge/cism/cism_exercise_1.ipynb b/notebooks/challenge/cism/cism_exercise_1.ipynb
@@ -125,7 +125,7 @@
     "and <font face=\"Courier\" color='purple'><strong>account number</strong></font>. \n",
     "For instance:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "\n",
     "Modify the environment variables:\n",

diff --git a/notebooks/challenge/clm_ctsm/clm_exercise_1.ipynb b/notebooks/challenge/clm_ctsm/clm_exercise_1.ipynb
@@ -65,7 +65,7 @@
     "If needed, change <font face=\"Courier\" color='purple'><strong>job queue</strong></font>, <font face=\"Courier\" color='purple'><strong>account number</strong></font>, or <font face=\"Courier\" color='purple'><strong>wallclock time</strong></font>. \n",
     "For instance:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013,JOB_WALLCLOCK_TIME=0:15:00\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013,JOB_WALLCLOCK_TIME=0:15:00\n",
     "```\n",
     "<br>\n",
     "\n",

diff --git a/notebooks/challenge/clm_ctsm/clm_exercise_2.ipynb b/notebooks/challenge/clm_ctsm/clm_exercise_2.ipynb
@@ -90,7 +90,7 @@
     "If needed, change <font face=\"Courier\" color='purple'><strong>job queue</strong></font>, <font face=\"Courier\" color='purple'><strong>account number</strong></font>, or <font face=\"Courier\" color='purple'><strong>wallclock time</strong></font>. \n",
     "For instance:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013,JOB_WALLCLOCK_TIME=0:15:00\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013,JOB_WALLCLOCK_TIME=0:15:00\n",
     "```\n",
     "<br>\n",
     "\n",

diff --git a/notebooks/challenge/clm_ctsm/clm_exercise_3.ipynb b/notebooks/challenge/clm_ctsm/clm_exercise_3.ipynb
@@ -99,7 +99,7 @@
     "If needed, change <font face=\"Courier\" color='purple'><strong>job queue</strong></font>, <font face=\"Courier\" color='purple'><strong>account number</strong></font>, or <font face=\"Courier\" color='purple'><strong>wallclock time</strong></font>. \n",
     "For instance:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013,JOB_WALLCLOCK_TIME=0:15:00\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013,JOB_WALLCLOCK_TIME=0:15:00\n",
     "```\n",
     "<br>\n",
     "\n",

diff --git a/notebooks/challenge/mom/mom_exercise_5.ipynb b/notebooks/challenge/mom/mom_exercise_5.ipynb
@@ -171,7 +171,7 @@
     "and <font face=\"Courier\" color='purple'><strong>account number</strong></font>. \n",
     "For instance:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "<br>\n",
     "\n",

diff --git a/notebooks/challenge/pop/pop_exercise_1.ipynb b/notebooks/challenge/pop/pop_exercise_1.ipynb
@@ -111,7 +111,7 @@
     "and <font face=\"Courier\" color='purple'><strong>account number</strong></font>. \n",
     "For instance:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "<br>\n",
     "\n",

diff --git a/notebooks/challenge/pop/pop_exercise_2.ipynb b/notebooks/challenge/pop/pop_exercise_2.ipynb
@@ -110,7 +110,7 @@
     "and <font face=\"Courier\" color='purple'><strong>account number</strong></font>. \n",
     "For instance:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "\n",
     "Build and submit:\n",

diff --git a/notebooks/challenge/pop/pop_exercise_3.ipynb b/notebooks/challenge/pop/pop_exercise_3.ipynb
@@ -110,7 +110,7 @@
     "and <font face=\"Courier\" color='purple'><strong>account number</strong></font>. \n",
     "For instance:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "\n",
     "Build and submit:\n",

diff --git a/notebooks/challenge/pop/pop_exercise_4.ipynb b/notebooks/challenge/pop/pop_exercise_4.ipynb
@@ -105,7 +105,7 @@
     "and <font face=\"Courier\" color='purple'><strong>account number</strong></font>. \n",
     "For instance:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "\n",
     "Build and submit:\n",

diff --git a/notebooks/namelist/exercises/exercise_cam_output.ipynb b/notebooks/namelist/exercises/exercise_cam_output.ipynb
@@ -151,7 +151,7 @@
     "If needed, change `job queue` and `account number`. <br>\n",
     "For instance, to run in the queue `regular` and the project number ``UESM0013`` (You should use the project number given for this tutorial), use the command:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "\n",
     "**# Build and submit**\n",

diff --git a/notebooks/namelist/exercises/exercise_tuning_parameter.ipynb b/notebooks/namelist/exercises/exercise_tuning_parameter.ipynb
@@ -114,7 +114,7 @@
     "If needed, change `job queue` and `account number`.  <br>\n",
     "For instance, to run in the queue `regular` and the project number `UESM0013`, use the command:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "\n",
     "\n",

diff --git a/notebooks/resources/profile.ipynb b/notebooks/resources/profile.ipynb
@@ -82,7 +82,7 @@
     "\n",
     "- If (Wed at another time) then\n",
     "```\n",
-    "./xmlchange JOB_QUEUE=regular\n",
+    "./xmlchange JOB_QUEUE=tutorial\n",
     "```\n",
     "\n",
     "If you do use these commands, make sure for the `JOB_QUEUE` you are using the **correct** reservation code for the relevant day _and_ time of that lab session. You should not have to set the `PROJECT` more than once during the tutorial if your profile is set up, as described below, but we include it for your reference in case you are having trouble."

diff --git a/notebooks/resources/tutorial_specific.ipynb b/notebooks/resources/tutorial_specific.ipynb
@@ -260,7 +260,7 @@
     "\n",
     "Copy over the `.tcshrc` file to your home directory:\n",
     "```\n",
-    "cp /glade/campaign/cesm/tutorial/tutorial_2024_envy/tcshrc ~/.tcshrc\n",
+    "cp /glade/campaign/cesm/tutorial/tutorial_2024_env/tcshrc ~/.tcshrc\n",
     "```\n",
     "    \n",
     "<br>\n",

diff --git a/notebooks/sourcemods/exercises/exercise_add_field.ipynb b/notebooks/sourcemods/exercises/exercise_add_field.ipynb
@@ -157,7 +157,7 @@
     "For instance, to run in the queue `regular` and the project number `UESM0013`, use the command:\n",
     "\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "\n",
     "**# Build and submit**\n",

diff --git a/notebooks/sourcemods/exercises/exercise_rain_threshold.ipynb b/notebooks/sourcemods/exercises/exercise_rain_threshold.ipynb
@@ -106,7 +106,7 @@
     "If needed, change `job queue` and `account number` \n",
     "For instance:\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "\n",
     "Build and submit:\n",

diff --git a/notebooks/troubleshooting/exercises/troubleshooting_cam.ipynb b/notebooks/troubleshooting/exercises/troubleshooting_cam.ipynb
@@ -117,7 +117,7 @@
     "For instance, to run in the queue `regular` and the project number ``UESM0013`` (you should use the project number given for this tutorial), use the command:\n",
     "\n",
     "```  \n",
-    "./xmlchange JOB_QUEUE=regular,PROJECT=UESM0013\n",
+    "./xmlchange JOB_QUEUE=tutorial,PROJECT=UESM0013\n",
     "```\n",
     "\n",
     "**# Build and submit**\n",

diff --git a/notebooks_copy/basics/basics_overview.ipynb b/notebooks_copy/basics/basics_overview.ipynb
@@ -0,0 +1,109 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "b2cd974a-dfbb-4937-8ed0-ab87ab60f1ef",
+   "metadata": {},
+   "source": [
+    "# Basics"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "9db9d54e-ef78-44ef-a003-4ddd8a416317",
+   "metadata": {},
+   "source": [
+    "The CESM Model is developed around a structured workflow. The first step of this workflow is to set up your workspace, which is usually a one-time task. After setting up your workspace, a basic CESM simulation can be run with only four commands. This section will cover these steps and enable you to complete your first CESM run."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "e2abf5cb-c507-408e-8f2a-2fd12934873d",
+   "metadata": {},
+   "source": [
+    "## Workflow Elements"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "acfe09a5-e3ee-457a-a328-bde665cfe761",
+   "metadata": {
+    "jp-MarkdownHeadingCollapsed": true,
+    "tags": []
+   },
+   "source": [
+    "<div class=\"alert alert-info\" style=\"text-align: left;\">\n",
+    "\n",
+    "- Set up workspace (one time setup)\n",
+    "    - **``Download``** the CESM code\n",
+    "    - **``Create or Locate ``** an **``Input Data``** Root Directory\n",
+    "    - Possibly **``Porting``** if not on a setup machine\n",
+    "- Creating, Running and Reviewing a Case\n",
+    "    - **``Create``** a new case\n",
+    "    - **``Invoke``** `case.setup`\n",
+    "    - **``Build``** the executable with `case.build`\n",
+    "    - **``Run``** the model with `case.submit`\n",
+    "    - **``Review``** output data\n",
+    "\n",
+    "</div>"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "0c07b51d-f999-4737-9739-3ea989f20802",
+   "metadata": {},
+   "source": [
+    "## Setting up your environment"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "9d6954eb-3505-4a58-b6fa-bea7047c63cf",
+   "metadata": {},
+   "source": [
+    "Every time you log onto the NCAR HPC you want to ensure you have the correct modules loaded. Please refer to the [NCAR HPC environment](https://ncar.github.io/CESM-Tutorial/notebooks/resources/profile.html#setting-up-your-ncar-hpc-environment) section to make sure you are setting up your environment properly. \n",
+    "\n",
+    "**YOU SHOULD ENSURE YOU CHECK THIS EVERY TIME YOU ARE BUILDING A NEW CASE**\n",
+    "\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "523165e7-728b-4305-b9f7-4e6ee530a27d",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "715674b2-a858-49ae-b044-7f7fc61a750c",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.10.13"
+  },
+  "toc-showcode": false
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}