Merge pull request #202 from cecilehannay/main

Various changes in basics including updating figures in a more general way (independant of the machine)
NCAR · Jun 28, 2024 · bf8fec2 · bf8fec2
2 parents c996fa6 + 21e0d91
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diff --git a/images/basics/CESM2_Workspaces_Detail.png b/images/basics/CESM2_Workspaces_Detail.png
diff --git a/notebooks/basics/cesm_workspaces.ipynb b/notebooks/basics/cesm_workspaces.ipynb
@@ -33,14 +33,24 @@
    ]
   },
   {
+   "attachments": {},
    "cell_type": "markdown",
    "id": "6b1d1b2e-9c93-4e47-8f4d-d51b96cdab7b",
    "metadata": {},
    "source": [
     "## Workspace Overview\n",
     "\n",
     "![CESM workspace](../../images/basics/CESM2_Workspaces_Detail.png)\n",
-    "*<p style=\"text-align: center;\"> Figure: Overview of the CESM2 Workspace Paths </p>*"
+    "*<p style=\"text-align: center;\"> Figure: Overview of the CESM2 Workspace Directories </p>*\n",
+    "\n",
+    "For the current tutorial on derecho, the paths are:\n",
+    "- `$SRCROOT`     = `/glade/work/$USER/code/my_cesm_code`\n",
+    "- `$DIN_LOC_ROOT`` = `/glade/campaign/cesm/cesmdata/cseg/inputdata`\n",
+    "- `$CASEROOT`    = `/glade/work/$USER/cases/$CASE`\n",
+    "-`$CIME_OUTPUT_ROOT` = `/glade/derecho/scratch/$USER`\n",
+    "-  `$EXEROOT`     =`/glade/derecho/scratch/$USER/$CASE/bld` \n",
+    "- `$RUNDIR`      =`/glade/derecho/scratch/$USER/$CASE/run` \n",
+    "- `$DOUT_S_ROOT` =`/glade/derecho/scratch/$USER/archive/$CASE` \n"
    ]
   },
   {
@@ -148,7 +158,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.12"
+   "version": "3.10.13"
   }
  },
  "nbformat": 4,

diff --git a/notebooks/basics/exercises/examine_history_B1850.ipynb b/notebooks/basics/exercises/examine_history_B1850.ipynb
@@ -92,6 +92,12 @@
     "\n",
     "```\n",
     "module list\n",
+    "```\n",
+    "\n",
+    "If you don't see `ncview` in the list of modules, you can load it by doing:\n",
+    "\n",
+    "```\n",
+    "module load ncview\n",
     "```"
    ]
   },
@@ -155,18 +161,18 @@
     "<div class=\"alert alert-info\">\n",
     "<strong>Select the Surface Temperature Variable: </strong><br><br>\n",
     "\n",
-    "Click on the \"(244) 2d vars\" button shown above. This will pull up a list of all 2d vars on the b.day1.0 January 0001 CAM history file. This is a long list but it is in alphabetical order. You are looking for the TS variable.  \n",
+    "Click on the **(244) 2d vars** button shown above. This will pull up a list of all 2d vars on the b.day1.0 January 0001 CAM history file. This is a long list but it is in alphabetical order. You are looking for the `TS` variable.  \n",
     "<br>\n",
     "\n",
     "<strong>Change the color selection from detail to bright: </strong><br>\n",
     "\n",
-    "Click on the color button marked with \"detail\". This will change the color selection to \"3gauss\". Clicking again will change this to \"ssec\" and finally \"bright\".\n",
+    "Click on the color button marked with **detail**. This will change the color selection to **3gauss**. Clicking again will change this to **ssec** and finally **bright**.\n",
     "    \n",
     "<br>\n",
     "    \n",
     "<strong>Increase the map plot size: </strong><br>\n",
     "\n",
-    "Click on the magnify button marked with \"M X3\". This will change the magnification to \"M X4\". Clicking again will change this to \"M X5\" and finally \"M X6\"\n",
+    "Click on the magnify button marked with **M X3**. This will change the magnification to \"M X4\". Clicking again will change this to \"M X5\" and finally \"M X6\"\n",
     "    \n",
     "</div>\n",
     "\n",