Merge pull request #257 from rrbuchholz/main

Updating chemistry exercises: correcting emission paths.
NCAR · Aug 7, 2024 · fb63c32 · fb63c32
2 parents 0442f52 + 102d2db
commit fb63c32
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Showing 4 changed files with 47 additions and 64 deletions.
diff --git a/notebooks/challenge/cam-chem_waccm/exercise_1.ipynb b/notebooks/challenge/cam-chem_waccm/exercise_1.ipynb
@@ -2,15 +2,13 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "arctic-workstation",
    "metadata": {},
    "source": [
     "# 1: Control case: running with chemistry"
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "urban-jason",
    "metadata": {},
    "source": [
     "\n",
@@ -31,7 +29,6 @@
   },
   {
    "cell_type": "markdown",
-   "id": "animal-crash",
    "metadata": {},
    "source": [
     "\n",
@@ -92,7 +89,6 @@
   },
   {
    "cell_type": "markdown",
-   "id": "synthetic-reproduction",
    "metadata": {},
    "source": [
     "\n",
@@ -234,15 +230,14 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "northern-agency",
    "metadata": {},
    "outputs": [],
    "source": []
   }
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
+   "display_name": "Python 3",
    "language": "python",
    "name": "python3"
   },
@@ -256,7 +251,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.13"
+   "version": "3.7.6"
   }
  },
  "nbformat": 4,

diff --git a/notebooks/challenge/cam-chem_waccm/exercise_2.ipynb b/notebooks/challenge/cam-chem_waccm/exercise_2.ipynb
@@ -2,15 +2,13 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "prepared-adaptation",
    "metadata": {},
    "source": [
     "# 2: Test case: changing the chemistry"
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "sound-recovery",
    "metadata": {},
    "source": [
     "\n",
@@ -46,7 +44,6 @@
   },
   {
    "cell_type": "markdown",
-   "id": "daily-acting",
    "metadata": {},
    "source": [
     "\n",
@@ -73,21 +70,20 @@
     "(note this will be different for WACCM)\n",
     "    \n",
     "- Use xmlchange to append a pointer to your user mechanism: <br>\n",
-    "``--usr_mech_infile `pwd`/my_chem_mech.in``\n",
+    "``./xmlchange --append CAM_CONFIG_OPTS=\"--usr_mech_infile `pwd`/my_chem_mech.in\"``\n",
     "    \n",
     "- Check the ``CAM_CONFIG_OPTS`` has been changed <br>\n",
     "``./xmlquery CAM_CONFIG_OPTS`` <br>\n",
     "``CAM_CONFIG_OPTS: -phys cam6 -chem trop_strat_mam4_vbs -age_of_air_trcs --usr_mech_infile /glade/u/home/$USER/cases/$CASENAME/my_chem_mech.in``\n",
     "    \n",
-    "- You will need to reset the case setup, and rebuild before submitting\n",
+    "- When an important xml variable like CAM_CONFIG_OPTS is changed, resetting the setup is needed. You will need to reset the case setup, and rebuild before submitting. (Note that in general, you only need to reset or clean build when a message shows up in the command prompt stating to reset or clean build).\n",
     "\n",
     "</details>\n",
     "</div>\n"
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "political-wages",
    "metadata": {},
    "source": [
     "\n",
@@ -252,7 +248,6 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "alpha-politics",
    "metadata": {},
    "outputs": [],
    "source": []
@@ -274,7 +269,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.1"
+   "version": "3.7.6"
   }
  },
  "nbformat": 4,