fixed doc bugs

DESCRIPTION

@@ -2,7 +2,7 @@ Package: crawl
 Type: Package
 Title: Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data
 Version: 2.3.1
-Date: 2024-10-02
+Date: 2024-10-03
 Authors@R: c(person("Devin S.", "Johnson", email = "[email protected]",
                   role = c("aut", "cre")),
                   person("Josh", "London", email = "[email protected]",
@@ -36,7 +36,7 @@ Encoding: UTF-8
 LazyLoad: yes
 ByteCompile: TRUE
 NeedsCompilation: yes
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 URL: https://github.com/NMML/crawl
 BugReports: https://github.com/NMML/crawl/issues
 LazyData: true

R/crawl-internal.R

@@ -82,3 +82,17 @@ sfc_as_cols <- function(x, geometry, names = c("x","y")) {
   ret <- setNames(ret,names)
   dplyr::bind_cols(x,ret)
 }
+
+# conf_elps <- function(x, y, V, prob=0.95){
+#   require(sf, quietly = TRUE)
+#   v <- eigen(V)$vectors
+#   lambda <- eigen(V)$values
+#   t <- seq(0,2*pi, length=50)
+#   m <- qchisq(prob,2)
+#   x_l <- x + sqrt(m*lambda[1])*v[1,1]*cos(t) + sqrt(m*lambda[2])*v[1,2]*sin(t)
+#   y_l <- y + sqrt(m*lambda[1])*v[2,1]*cos(t) + sqrt(m*lambda[2])*v[2,2]*sin(t)
+#   ell <- cbind(x=x_l, y=y_l)
+#   ell <- st_linestring(ell) |> st_cast("POLYGON") 
+#   return(st_sfc(list(ell)))
+# }
+

R/crawl-package.R

@@ -10,7 +10,7 @@
 #' Package: \tab crawl\cr 
 #' Type: \tab Package\cr 
 #' Version: \tab 2.3.1\cr 
-#' Date: \tab October 2, 2024\cr 
+#' Date: \tab October 3, 2024\cr 
 #' License: \tab CC0 \cr 
 #' LazyLoad: \tab yes\cr 
 #' }
@@ -25,7 +25,6 @@
 #'  
 #' @name crawl-package
 #' @aliases crawl-package crawl
-#' @docType package
 #' @author Josh London and Devin S. Johnson 
 #' 
 #' Maintainer: Devin S. Johnson <devin.johnson@@noaa.gov>
@@ -40,8 +39,8 @@
 #'             na.pass optim pchisq pexp pnorm qnorm 
 #'             rchisq runif sd setNames median rnorm
 #' @useDynLib crawl, .registration = TRUE
+"_PACKAGE"
 
-NULL
 
 if(getRversion() >= "2.15.1")  utils::globalVariables(c("."))
 

R/crwPredict.R

@@ -21,14 +21,11 @@
 #' @param return.type character. Should be one of \code{"minimal","flat","list"} (see Details).
 #' @param ... Additional arguments for testing new features
 #' 
-#' @details 
-#' \itemize{
-#' \item("predTime"){
-#' \code{predTime} can be either passed as a separate vector of POSIXct or 
+#' @details \code{predTime} can be either passed as a separate vector of POSIXct or 
 #' numeric values for all prediction times expected in the returned object. 
 #' Note, previous versions of \code{crwPredict} would return both times 
 #' specified via \code{predTime} as well as each original observed time. This is
-#'  no longer the default (see \item{return.type}). If the original data were 
+#'  no longer the default (see \code{return.type}). If the original data were 
 #'  provided as a POSIXct type, then \code{crwPredict} can derive a sequence of 
 #'  regularly spaced prediction times from the original data. This is specified 
 #'  by providing a character string that corresponds to the \code{by} argument 
@@ -37,8 +34,6 @@
 #'  (e.g. '1 hour' will round up to the nearest hour, '30 mins' will round up to 
 #'  the nearest minute) and start the sequence from there. The last observation 
 #'  time is truncated down to the nearest unit to specify the end time.
-#' }
-#' }
 #' 
 #' @return
 #'