Issue #2: converted all INI files to YAML

OASIS.yml

@@ -0,0 +1,7 @@
+---
+config:
+  version: 1.0
+data:
+  url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/OASIS.tar.gz?dl=1
+  action: expand
+  destination: data

anisotropic_nets_brats_challenge_model_zoo.yml

@@ -0,0 +1,18 @@
+---
+config:
+  version: 1.0
+data:
+  local_id: BRATS_examples
+  url: https://www.dropbox.com/s/jyxnm3cqokjghje/BRATS_examples.tar.gz?dl=1
+  action: expand
+  destination: data
+weights:
+  local_id: anisotropic_nets_brats_challenge
+  url: https://www.dropbox.com/s/cnbsszxa418xc1x/anisotropic_nets_brats_challenge_weights.tar.gz?dl=1
+  action: expand
+  destination: models
+network_inference_config:
+  local_id: anisotropic_nets_brats_challenge
+  url: https://www.dropbox.com/s/il6uo6bwznuxd6k/anisotropic_nets_brats_challenge_code_config.tar.gz?dl=1
+  action: expand
+  destination: extensions

anisotropic_nets_brats_challenge_model_zoo_code.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+network_inference_config:
+  local_id: anisotropic_nets_brats_challenge
+  url: https://www.dropbox.com/s/il6uo6bwznuxd6k/anisotropic_nets_brats_challenge_code_config.tar.gz?dl=1
+  action: expand
+  destination: extensions

anisotropic_nets_brats_challenge_model_zoo_data.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+data:
+  local_id: BRATS_examples
+  url: https://www.dropbox.com/s/jyxnm3cqokjghje/BRATS_examples.tar.gz?dl=1
+  action: expand
+  destination: data

anisotropic_nets_brats_challenge_model_zoo_weights.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+weights:
+  local_id: anisotropic_nets_brats_challenge
+  url: https://www.dropbox.com/s/cnbsszxa418xc1x/anisotropic_nets_brats_challenge_weights.tar.gz?dl=1
+  action: expand
+  destination: models

autocontext_mr_ct_model_zoo.yml

@@ -0,0 +1,18 @@
+---
+config:
+  version: 1.0
+data:
+  local_id: mr_ct_regression
+  url: https://www.dropbox.com/s/lv31fultntgw66t/mr_ct_regression_model_zoo_data.tar.gz?dl=1
+  action: expand
+  destination: data
+error_maps:
+  local_id: autocontext_mr_ct
+  url: https://www.dropbox.com/s/xx5ahj4m12bf67h/autocontext_mr_ct_initial_maps.tar.gz?dl=1
+  action: expand
+  destination: models
+code:
+  local_id: autocontext_mr_ct
+  url: https://www.dropbox.com/s/746d45nkk41enjz/autocontext_mr_ct_model_zoo_config.tar.gz?dl=1
+  action: expand
+  destination: extensions

autocontext_mr_ct_model_zoo_config.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+code:
+  local_id: autocontext_mr_ct
+  url: https://www.dropbox.com/s/746d45nkk41enjz/autocontext_mr_ct_model_zoo_config.tar.gz?dl=1
+  action: expand
+  destination: extensions

autocontext_mr_ct_model_zoo_initial_maps.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+error_maps:
+  local_id: autocontext_mr_ct
+  url: https://www.dropbox.com/s/xx5ahj4m12bf67h/autocontext_mr_ct_initial_maps.tar.gz?dl=1
+  action: expand
+  destination: models

cell_count_model_zoo.yml

@@ -0,0 +1,18 @@
+---
+config:
+  version: 1.0
+code:
+  local_id: cell_count
+  url: https://www.dropbox.com/s/s78597i22y0oiwb/cell_count_code_config.tar.gz?dl=1
+  action: expand
+  destination: extensions
+weights:
+  local_id: cell_count
+  url: https://www.dropbox.com/s/jajbskpkhpycnep/cell_count_weights.tar.gz?dl=1
+  action: expand
+  destination: models
+data:
+  local_id: cell_count
+  url: https://www.dropbox.com/s/sowayyjmbaap6ot/cell_count_data.tar.gz?dl=1
+  action: expand
+  destination: data

cell_count_model_zoo_code.yml

@@ -0,0 +1,13 @@
+---
+config:
+  version: 1.0
+code:
+  local_id: cell_count
+  url: https://www.dropbox.com/s/s78597i22y0oiwb/cell_count_code_config.tar.gz?dl=1
+  action: expand
+  destination: extensions
+data:
+  local_id: cell_count
+  url: https://www.dropbox.com/s/sowayyjmbaap6ot/cell_count_data.tar.gz?dl=1
+  action: expand
+  destination: data

cell_count_model_zoo_weights.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+weights:
+  local_id: cell_count
+  url: https://www.dropbox.com/s/jajbskpkhpycnep/cell_count_weights.tar.gz?dl=1
+  action: expand
+  destination: models

deepmedic.yml

@@ -0,0 +1,7 @@
+---
+config:
+  version: 1.0
+download:
+  url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/deepmedic.tar.gz
+  action: expand
+  destination: examples

default.yml

@@ -0,0 +1,7 @@
+---
+config:
+  version: 1.0
+download:
+  url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/default.tar.gz
+  action: expand
+  destination: examples

default_multimodal.yml

@@ -0,0 +1,7 @@
+---
+config:
+  version: 1.0
+download:
+  url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/default_multimodal.tar.gz
+  action: expand
+  destination: examples

dense_vnet_abdominal_ct_model_zoo.yml

@@ -0,0 +1,18 @@
+---
+config:
+  version: 1.0
+code:
+  local_id: dense_vnet_abdominal_ct
+  url: https://www.dropbox.com/s/ptu46os7lfmj0dl/dense_vnet_abdominal_ct_code_config.tar.gz?dl=1
+  action: expand
+  destination: extensions
+data:
+  local_id: dense_vnet_abdominal_ct
+  url: https://www.dropbox.com/s/5fk0m9v12if5da9/dense_vnet_abdominal_ct_model_zoo_data.tar.gz?dl=1
+  action: expand
+  destination: data
+weights:
+  local_id: dense_vnet_abdominal_ct
+  url: https://www.dropbox.com/s/zvc8stqo6womvou/dense_vnet_abdominal_ct_weights.tar.gz?dl=1
+  action: expand
+  destination: models

dense_vnet_abdominal_ct_model_zoo_code.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+code:
+  local_id: dense_vnet_abdominal_ct
+  url: https://www.dropbox.com/s/ptu46os7lfmj0dl/dense_vnet_abdominal_ct_code_config.tar.gz?dl=1
+  action: expand
+  destination: extensions

dense_vnet_abdominal_ct_model_zoo_data.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+data:
+  local_id: dense_vnet_abdominal_ct
+  url: https://www.dropbox.com/s/5fk0m9v12if5da9/dense_vnet_abdominal_ct_model_zoo_data.tar.gz?dl=1
+  action: expand
+  destination: data

dense_vnet_abdominal_ct_model_zoo_weights.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+weights:
+  local_id: dense_vnet_abdominal_ct
+  url: https://www.dropbox.com/s/zvc8stqo6womvou/dense_vnet_abdominal_ct_weights.tar.gz?dl=1
+  action: expand
+  destination: models

highres3dnet_brain_parcellation_model_zoo.yml

@@ -0,0 +1,18 @@
+---
+config:
+  version: 1.0
+data:
+  local_id: OASIS
+  url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/OASIS.tar.gz?dl=1
+  action: expand
+  destination: data
+weights:
+  local_id: highres3dnet_brain_parcellation
+  url: https://www.dropbox.com/s/nxg2ixs9rh1p9ri/highres3dnet_brain_parcellation_weights.tar.gz?dl=1
+  action: expand
+  destination: models
+network_inference_config:
+  local_id: highres3dnet_brain_parcellation
+  url: https://www.dropbox.com/s/r2q08q1kkd534p4/highres3dnet_brain_parcellation_config.tar.gz?dl=1
+  action: expand
+  destination: extensions

highres3dnet_brain_parcellation_model_zoo_code.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+network_inference_config:
+  local_id: highres3dnet_brain_parcellation
+  url: https://www.dropbox.com/s/r2q08q1kkd534p4/highres3dnet_brain_parcellation_config.tar.gz?dl=1
+  action: expand
+  destination: extensions

highres3dnet_brain_parcellation_model_zoo_weights.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+weights:
+  local_id: highres3dnet_brain_parcellation
+  url: https://www.dropbox.com/s/nxg2ixs9rh1p9ri/highres3dnet_brain_parcellation_weights.tar.gz?dl=1
+  action: expand
+  destination: models

hybrid_mr_ct_model_zoo.yml

@@ -0,0 +1,18 @@
+---
+config:
+  version: 1.0
+data:
+  local_id: mr_ct_regression
+  url: https://www.dropbox.com/s/lv31fultntgw66t/mr_ct_regression_model_zoo_data.tar.gz?dl=1
+  action: expand
+  destination: data
+error_maps:
+  local_id: isampler_autocontext_mr_ct
+  url: https://www.dropbox.com/s/xx5ahj4m12bf67h/autocontext_mr_ct_initial_maps.tar.gz?dl=1
+  action: expand
+  destination: models
+code:
+  local_id: isampler_autocontext_mr_ct
+  url: https://www.dropbox.com/s/mq4pgey1zfeai24/isampler_autocontext_mr_ct_model_zoo_config.tar.gz?dl=1
+  action: expand
+  destination: extensions

monomodal_parcellation.yml

@@ -0,0 +1,7 @@
+---
+config:
+  version: 1.0
+download:
+  url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/monomodal_parcellation.tar.gz
+  action: expand
+  destination: data

mr_ct_regression_model_zoo.yml

@@ -0,0 +1,18 @@
+---
+config:
+  version: 1.0
+data:
+  local_id: mr_ct_regression
+  url: https://www.dropbox.com/s/lv31fultntgw66t/mr_ct_regression_model_zoo_data.tar.gz?dl=1
+  action: expand
+  destination: data
+code:
+  local_id: mr_ct_regression
+  url: https://www.dropbox.com/s/ll2kr19suwlof6g/mr_ct_regression_model_zoo_config.tar.gz?dl=1
+  action: expand
+  destination: extensions
+error_maps:
+  local_id: mr_ct_regression
+  url: https://www.dropbox.com/s/9hp5qglttswecmg/mr_ct_regression_model_zoo_initial_error_maps.tar.gz?dl=1
+  action: expand
+  destination: models

mr_ct_regression_model_zoo_config.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+code:
+  local_id: mr_ct_regression
+  url: https://www.dropbox.com/s/ll2kr19suwlof6g/mr_ct_regression_model_zoo_config.tar.gz?dl=1
+  action: expand
+  destination: extensions

mr_ct_regression_model_zoo_data.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+data:
+  local_id: mr_ct_regression
+  url: https://www.dropbox.com/s/lv31fultntgw66t/mr_ct_regression_model_zoo_data.tar.gz?dl=1
+  action: expand
+  destination: data

mr_ct_regression_model_zoo_initial_error_maps.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+weights:
+  local_id: mr_ct_regression
+  url: https://www.dropbox.com/s/9hp5qglttswecmg/mr_ct_regression_model_zoo_initial_error_maps.tar.gz?dl=1
+  action: expand
+  destination: models

multimodal_BRATS.yml

@@ -0,0 +1,7 @@
+---
+config:
+  version: 1.0
+download:
+  url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/multimodal_BRATS.tar.gz
+  action: expand
+  destination: data

scalenet.yml

@@ -0,0 +1,7 @@
+---
+config:
+  version: 1.0
+download:
+  url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/scalenet.tar.gz
+  action: expand
+  destination: examples

testing.yml

@@ -0,0 +1,11 @@
+---
+config:
+  version: 1.1
+data:
+  url: https://www.dropbox.com/s/5p5fdgy053tgmdj/testing_data_v0_3.tar.gz?dl=1
+  action: expand
+  destination: data
+code:
+  url: https://www.dropbox.com/s/2g8jr3wq8rw5xtv/testing_code_v0_3.tar.gz?dl=1
+  action: expand
+  destination: extensions

testing_data.yml

@@ -0,0 +1,7 @@
+---
+config:
+  version: 1.1
+download:
+  url: https://www.dropbox.com/s/5p5fdgy053tgmdj/testing_data_v0_3.tar.gz?dl=1
+  action: expand
+  destination: data

ultrasound_simulator_gan_model_zoo.yml

@@ -0,0 +1,18 @@
+---
+config:
+  version: 1.0
+data:
+  local_id: ultrasound_simulator_gan
+  url: https://www.dropbox.com/s/hu1i8yjdptwq6wj/ultrasound_simulator_gan_model_zoo_data.tar.gz?dl=1
+  action: expand
+  destination: data
+weights:
+  local_id: ultrasound_simulator_gan
+  url: https://www.dropbox.com/s/95smm4i464nwczm/ultrasound_simulator_gan_weights.tar.gz?dl=1
+  action: expand
+  destination: models
+code:
+  local_id: ultrasound_simulator_gan
+  url: https://www.dropbox.com/s/089l4ixd2k7fiyy/ultrasound_simulator_gan_code.tar.gz?dl=1
+  action: expand
+  destination: extensions

ultrasound_simulator_gan_model_zoo_code.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+code:
+  local_id: ultrasound_simulator_gan
+  url: https://www.dropbox.com/s/089l4ixd2k7fiyy/ultrasound_simulator_gan_code.tar.gz?dl=1
+  action: expand
+  destination: extensions

ultrasound_simulator_gan_model_zoo_data.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+data:
+  local_id: ultrasound_simulator_gan
+  url: https://www.dropbox.com/s/hu1i8yjdptwq6wj/ultrasound_simulator_gan_model_zoo_data.tar.gz?dl=1
+  action: expand
+  destination: data

ultrasound_simulator_gan_model_zoo_weights.yml

@@ -0,0 +1,8 @@
+---
+config:
+  version: 1.0
+weights:
+  local_id: ultrasound_simulator_gan
+  url: https://www.dropbox.com/s/95smm4i464nwczm/ultrasound_simulator_gan_weights.tar.gz?dl=1
+  action: expand
+  destination: models