Casanovo v4.2.0

4.2.0 - 2024-05-14

Added

• A deprecation warning will be issued when deprecated config options are used in the config file or in the model weights file.

Changed

• Config option max_iters has been renamed to cosine_schedule_period_iters to better reflect that it controls the number of iterations for the cosine half period of the learning rate.

Fixed

• Fix beam search caching failure when multiple beams have an equal predicted peptide score by breaking ties randomly.
• The mzTab output file now has proper line endings regardless of platform, fixing the extra \r found when run on Windows.