Bring noresm branch up to dates with FATES main. #12

Merged

mvertens merged 340 commits intoNorESMhub:noresmfrom NGEET:main

Oct 15, 2024

+11,285-3,240

This pull request is big! We're only showing the most recent 250 commits

Commits on Mar 18, 2024

update use statements
adrifoster
committed
add sourcefile
adrifoster
committed
trying to get exception test to work
adrifoster
committed

Commits on Mar 19, 2024

Commits on Mar 20, 2024

update test names
adrifoster
committed
get rid of unused uses
adrifoster
committed
Merge branch 'fire_weather_wind' of https://github.com/adrifoster/fates into fire_weather_wind
adrifoster
committed
renaming functions
adrifoster
committed

Commits on Mar 25, 2024

Commits on Mar 26, 2024

hydro safemath, looking into pinning zero ftc to min psi
rgknox
committed

Commits on Mar 29, 2024

added hydro code to force zero conductance a psi_min
rgknox
committed

Commits on Apr 2, 2024

Commits on Apr 3, 2024

adjusted ordering of initializing bounds on cch functions to avoid undefined variables, reduce minimum suction of cch and fixed an error check
rgknox
committed

Commits on Apr 5, 2024

Merge tag 'sci.1.72.6_api.34.0.0' into cch-safemath-zeroflux
rgknox
committed

Commits on Apr 8, 2024

Revision of some error message output for inventory initialisation, so it is more informative.
mpaiao
committed

Commits on Apr 13, 2024

initial commit
adrifoster
committed

Commits on Apr 15, 2024

trying to get test to work
adrifoster
committed

Commits on Apr 16, 2024

allow read in of parameters
adrifoster
committed
start adding allometry calculations
adrifoster
committed
get plotting to work
adrifoster
committed
add parameter file as argument to program
adrifoster
committed

Commits on Apr 17, 2024

plot all allometries
adrifoster
committed
add function docstring
adrifoster
committed
add more comments and instructions
adrifoster
committed
absolute path for parameter file
adrifoster
committed
remove if allocated statement
adrifoster
committed
automatically find netcdf paths
adrifoster
committed
get working on derecho, save figures
adrifoster
committed

Commits on Apr 18, 2024

Commits on Apr 19, 2024

add quadratic test; refactor to allow picking which test to run
adrifoster
committed
some pylint changes
adrifoster
committed

Commits on Apr 22, 2024

some pythonic updates
adrifoster
committed
check for executable instead of unit test
adrifoster
committed
more clear dictionary key
adrifoster
committed
upading dict lambdas
adrifoster
committed

Commits on Apr 23, 2024

Commits on Apr 24, 2024

shortening line lengths
ckoven
committed

Commits on Apr 26, 2024

Merge pull request #1166 from ckoven/fire_bugfix
rgknox
authored

Commits on Apr 27, 2024

removed unnecessary zeroing in site-level history output
rgknox
committed

Commits on Apr 29, 2024

Commits on Apr 30, 2024

Commits on May 1, 2024

Update main/FatesInterfaceMod.F90

ckoven
and
glemieux
authored
Merge pull request #1174 from rgknox/lai_ap_fixes
rgknox
authored
Update fire/SFMainMod.F90

adrifoster
and
ckoven
authored
Update fire/SFNesterovMod.F90

adrifoster
and
ckoven
authored
comment updates
adrifoster
committed
merge in main
adrifoster
committed
remove dewpoint constants
adrifoster
committed
fix need to clean builds
adrifoster
committed
disaggregating fluxes based on root length only when sumweights is zero, to enable first time-step issues in ctsm
rgknox
committed
merge in change from fire_refactor branch
adrifoster
committed
migrating unit testing to folder unit_testing
rgknox
committed
Merge pull request #1164 from rgknox/cch-safemath
rgknox
authored

Commits on May 3, 2024

Merge branch 'main' into allometry_unit_test
adrifoster
committed
fix merge conflict
adrifoster
committed
Merge branch 'fire_refactor' into fire_weather_wind
adrifoster
committed

Commits on May 7, 2024

add grass specific agw,sap,leaf allometry
XiulinGao
committed
update default allometry params for grass PFTs
XiulinGao
committed
Merge pull request #1171 from adrifoster/fire_refactor
glemieux
authored
merge in main
adrifoster
committed
move pfunit test to new testing dir
adrifoster
committed
small pylint fix
adrifoster
committed
Merge branch 'main' into fire_weather_wind
adrifoster
committed
fixing some typos
adrifoster
committed
minor typo and renaming corrections
glemieux
committed
add landuse mode checks for setting site_secondarylands...
glemieux
committed
edit generic allom subrountine for grass PFT
XiulinGao
committed
update default allom mode for grass PFT in param file
XiulinGao
committed

Commits on May 8, 2024

Commits on May 10, 2024

Commits on May 13, 2024

Commits on May 14, 2024

minor build fixes
glemieux
committed

Commits on May 15, 2024

conflict resolution in v2
rgknox
committed

Commits on May 16, 2024

nclmax nlevleaf: reverting for b4b testing
rgknox
committed

Commits on May 17, 2024

Commits on May 20, 2024

Commits on May 22, 2024

Commits on May 28, 2024

Commits on May 29, 2024

Commits on May 30, 2024

shortened some restart var names
rgknox
committed

Commits on Jun 4, 2024

change nocomp_pft_area_vector check to first diff then sum for better precision
glemieux
committed

Commits on Jun 6, 2024

Commits on Jun 10, 2024

Commits on Jun 11, 2024

Merge pull request #1208 from rgknox/history-zerofixes
glemieux
authored

Commits on Jun 12, 2024

Merge branch 'main' into fire_weather_wind
adrifoster
committed

Commits on Jun 13, 2024

simplify carea allometry wrap function to avoid redundant code
XiulinGao
committed

Commits on Jun 14, 2024

simplify calculation of biomass derivatives using biomass
XiulinGao
committed

Commits on Jun 17, 2024

Commits on Jun 18, 2024

remove old file
adrifoster
committed
Merge branch 'fire_weather_wind' of https://github.com/adrifoster/fates into fire_weather_wind
adrifoster
committed

Commits on Jun 19, 2024

Commits on Jun 24, 2024

update split_patches to take optional area input
glemieux
committed

Commits on Jun 25, 2024

Commits on Jun 26, 2024

Add logic to check for cases in which buffer should be inserted straight into the list
glemieux
committed

Commits on Jun 27, 2024

add sp mode check to litter initialization for bareground patches
glemieux
committed

Commits on Jun 28, 2024

initialize current tag for event code logging
glemieux
committed

Commits on Jul 8, 2024

Commits on Jul 9, 2024

Commits on Jul 10, 2024

fix on recruit l2fr
rgknox
committed

Commits on Jul 15, 2024

make sure to define state_vector if not in land use mode
glemieux
committed

Commits on Jul 17, 2024

Merge pull request #1223 from glemieux/landuse-v2-nanfix
glemieux
authored

Commits on Jul 19, 2024

Merge tag 'sci.1.77.1_api.36.0.0' into remove_nclmax
glemieux
committed

Commits on Jul 23, 2024

Commits on Jul 24, 2024

reverting nclmax to 3 for tests
rgknox
committed

Commits on Jul 25, 2024

More zeroing of dynamic arrays
rgknox
committed

Commits on Jul 26, 2024

Commits on Jul 30, 2024

Commits on Jul 31, 2024

Commits on Aug 13, 2024

Commits on Aug 23, 2024

remove test_results.md
adrifoster
committed
move wind speed calculation to site loop
adrifoster
committed
Merge branch 'main' into fire_weather_wind
adrifoster
committed
fix merge conflicts
adrifoster
committed
make suggested changes from review
adrifoster
committed
add new function to public statement
adrifoster
committed

Commits on Aug 29, 2024

Merge pull request #1215 from adrifoster/fire_weather_wind
glemieux
authored

Commits on Oct 2, 2024

first pass adding understory leaf longevity

JessicaNeedham
authored and
glemieux
committed
add understory leaf turnover to trimming logic

JessicaNeedham
authored and
glemieux
committed
fix typo

JessicaNeedham
authored and
glemieux
committed
update parameter file

JessicaNeedham
authored and
glemieux
committed
add patch files for updating param file

JessicaNeedham
authored and
glemieux
committed
address review comments - minor typo fixes

JessicaNeedham
authored and
glemieux
committed
update param names and valuess

JessicaNeedham
authored and
glemieux
committed
used a local variable leaf_long to reduce redundant code

rgknox
authored and
glemieux
committed
update xml patch

JessicaNeedham
authored and
glemieux
committed
reverting parameter file default

rgknox
authored and
glemieux
committed
Adding api36.2 (or 36.1) parameter change xml file

rgknox
authored and
glemieux
committed
debugged and applied first pass of the api36.1 parameters

rgknox
authored and
glemieux
committed
updated naming convention of parameter changing files

rgknox
authored and
glemieux
committed
fixing record of api36.0 parameter file record parameter_files/archive/api36.1.0_params_default.cdl

rgknox
authored and
glemieux
committed
made new shrubPFT patch file and starting to add in new PFT

jenniferholm
authored and
glemieux
committed
updating parameter batch file

jenniferholm
authored and
glemieux
committed
updating parameter batch file, again

jenniferholm
authored and
glemieux
committed
pftmap bug fix on xml file, made new params cdl file

jenniferholm
authored and
glemieux
committed
adding back the mapping between elm/fates pft 10 & 9 respectively.

rgknox
authored and
glemieux
committed
changed modparam tool to use float64

rgknox
authored and
glemieux
committed
update arctic shrub patch file to use archived param file
glemieux
committed
Merge branch 'jfn-ustory-leaf-turn' into api36.1.0-merge
glemieux
committed
Merge branch 'new-arctic-shrubPFT' into api36.1.0-merge
glemieux
committed
rename the patch parameter xml files
glemieux
committed
rename the archived parameter file to be used for the api36.1 update
glemieux
committed
update the instructions for the API 36.1 patch files
glemieux
committed
update the default parameter file
glemieux
committed
update api36.1 patch file to rename the pftnames
glemieux
committed

Commits on Oct 3, 2024

Commits on Oct 4, 2024

Merge pull request #1255 from glemieux/api36.1.0-merge
glemieux
authored