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Merge pull request #60 from OHDSI/develop
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v2.0.1
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mdlavallee92 authored Mar 31, 2023
2 parents 24c4e3d + 7cb0b5c commit 407740e
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3 changes: 3 additions & 0 deletions .Rbuildignore
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^work$
^README\.Rmd$
^pkgdown$
^cran-comments\.md$
^CRAN-SUBMISSION$
^LICENSE\.md$
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71 changes: 35 additions & 36 deletions DESCRIPTION
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Package: Capr
Title: Cohort Definition Application Programming in R
Version: 2.0.0
Title: Cohort Definition Application Programming
Version: 2.0.1
Authors@R: c(
person("Martin", "Lavallee", , "[email protected]", role = c("aut", "cre")),
person("Adam", "Black", , "[email protected]", role = "aut")
)
Description: The Capr package provides a programming language for defining OHDSI cohort definitions in R.
The functions in Capr allow for the programmatic creation of OHDSI concept sets and cohorts that can be serialized
to Atlas/CIRCE-BE compatible json files or to OHDSI-SQL. Capr functions can be used to create, save, and load
component parts to a cohort definition allowing R programmers to easily reuse cohort logic. Capr provides tools
to create a large number of OHDSI cohorts programmatically while also helping bridge the gap between human readable
descriptions of clinical phenotypes and their computational implmentation.
License: Apache License 2.0
Description: Provides a programming language for defining OHDSI cohort definitions in R to use in studies for Observational
Health Data Sciences and Informatics (OHDSI). The functions in 'Capr' allow for the programmatic creation of
OHDSI concept sets and cohorts that can be serialized to 'Atlas/CIRCE-BE' compatible 'json' files or to 'OHDSI-SQL'.
'Capr' functions can be used to create, save, and load component parts to a cohort definition allowing
R programmers to easily reuse cohort logic. 'Capr' provides tools to create a large number of OHDSI cohorts
programmatically while also helping bridge the gap between human readable descriptions of clinical phenotypes
and their computational implmentation.
License: Apache License (>= 2)
URL: https://ohdsi.github.io/Capr, https://github.com/OHDSI/Capr
BugReports: https://github.com/OHDSI/Capr/issues
Encoding: UTF-8
RoxygenNote: 7.2.3
Depends:
R (>= 3.5.0),
Imports:
magrittr (>= 1.5.0),
jsonlite,
methods,
purrr,
rlang,
dplyr,
checkmate,
tibble,
readr,
stringr,
glue,
cli,
digest,
fs,
lubridate,
DBI,
DatabaseConnector,
SqlRender
magrittr (>= 1.5.0),
jsonlite,
methods,
purrr,
rlang,
dplyr,
tidyr,
checkmate,
tibble,
readr,
stringr,
glue,
cli,
digest,
fs,
lubridate,
DBI,
DatabaseConnector,
SqlRender,
generics
Suggests:
testthat (>= 3.0.0),
knitr,
rmarkdown,
CohortGenerator,
CirceR,
Eunomia
rmarkdown
VignetteBuilder: knitr
Additional_repositories: https://OHDSI.github.io/drat
Config/testthat/edition: 3
Collate:
'Capr.R'
'conceptSet.R'
'attributes-concept.R'
'attributes-logic.R'
'query.R'
'window.R'
'criteria.R'
'attributes-nested.R'
'attributes-op.R'
'exit.R'
'cohort.R'
'attributes-concept.R'
'attributes-logic.R'
'attributes-nested.R'
'attributes-op.R'
'collectCodesetId.R'
'utils.R'
201 changes: 0 additions & 201 deletions LICENSE

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