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v2.0.1
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^work$ | ||
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^CRAN-SUBMISSION$ | ||
^LICENSE\.md$ |
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*.log | ||
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work/* | ||
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Package: Capr | ||
Title: Cohort Definition Application Programming in R | ||
Version: 2.0.0 | ||
Title: Cohort Definition Application Programming | ||
Version: 2.0.1 | ||
Authors@R: c( | ||
person("Martin", "Lavallee", , "[email protected]", role = c("aut", "cre")), | ||
person("Adam", "Black", , "[email protected]", role = "aut") | ||
) | ||
Description: The Capr package provides a programming language for defining OHDSI cohort definitions in R. | ||
The functions in Capr allow for the programmatic creation of OHDSI concept sets and cohorts that can be serialized | ||
to Atlas/CIRCE-BE compatible json files or to OHDSI-SQL. Capr functions can be used to create, save, and load | ||
component parts to a cohort definition allowing R programmers to easily reuse cohort logic. Capr provides tools | ||
to create a large number of OHDSI cohorts programmatically while also helping bridge the gap between human readable | ||
descriptions of clinical phenotypes and their computational implmentation. | ||
License: Apache License 2.0 | ||
Description: Provides a programming language for defining OHDSI cohort definitions in R to use in studies for Observational | ||
Health Data Sciences and Informatics (OHDSI). The functions in 'Capr' allow for the programmatic creation of | ||
OHDSI concept sets and cohorts that can be serialized to 'Atlas/CIRCE-BE' compatible 'json' files or to 'OHDSI-SQL'. | ||
'Capr' functions can be used to create, save, and load component parts to a cohort definition allowing | ||
R programmers to easily reuse cohort logic. 'Capr' provides tools to create a large number of OHDSI cohorts | ||
programmatically while also helping bridge the gap between human readable descriptions of clinical phenotypes | ||
and their computational implmentation. | ||
License: Apache License (>= 2) | ||
URL: https://ohdsi.github.io/Capr, https://github.com/OHDSI/Capr | ||
BugReports: https://github.com/OHDSI/Capr/issues | ||
Encoding: UTF-8 | ||
RoxygenNote: 7.2.3 | ||
Depends: | ||
R (>= 3.5.0), | ||
Imports: | ||
magrittr (>= 1.5.0), | ||
jsonlite, | ||
methods, | ||
purrr, | ||
rlang, | ||
dplyr, | ||
checkmate, | ||
tibble, | ||
readr, | ||
stringr, | ||
glue, | ||
cli, | ||
digest, | ||
fs, | ||
lubridate, | ||
DBI, | ||
DatabaseConnector, | ||
SqlRender | ||
magrittr (>= 1.5.0), | ||
jsonlite, | ||
methods, | ||
purrr, | ||
rlang, | ||
dplyr, | ||
tidyr, | ||
checkmate, | ||
tibble, | ||
readr, | ||
stringr, | ||
glue, | ||
cli, | ||
digest, | ||
fs, | ||
lubridate, | ||
DBI, | ||
DatabaseConnector, | ||
SqlRender, | ||
generics | ||
Suggests: | ||
testthat (>= 3.0.0), | ||
knitr, | ||
rmarkdown, | ||
CohortGenerator, | ||
CirceR, | ||
Eunomia | ||
rmarkdown | ||
VignetteBuilder: knitr | ||
Additional_repositories: https://OHDSI.github.io/drat | ||
Config/testthat/edition: 3 | ||
Collate: | ||
'Capr.R' | ||
'conceptSet.R' | ||
'attributes-concept.R' | ||
'attributes-logic.R' | ||
'query.R' | ||
'window.R' | ||
'criteria.R' | ||
'attributes-nested.R' | ||
'attributes-op.R' | ||
'exit.R' | ||
'cohort.R' | ||
'attributes-concept.R' | ||
'attributes-logic.R' | ||
'attributes-nested.R' | ||
'attributes-op.R' | ||
'collectCodesetId.R' | ||
'utils.R' |
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