Merge pull request #13 from OpenSourceBrain/development

Update spike times for nrn 8.1
OpenSourceBrain · Mar 28, 2023 · f09c989 · f09c989
2 parents 7b79e24 + 5420175
commit f09c989
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Showing 15 changed files with 16 additions and 14 deletions.
diff --git a/.gitignore b/.gitignore
@@ -49,3 +49,4 @@ ChannelTest/*.log
 /NMC/NeuroML2/nmllite/Sim_IClamp_*.json
 report.*.txt
 *_nrn.py
+arm64
diff --git a/NMC/NEURON/.test.l1.mep b/NMC/NEURON/.test.l1.mep
@@ -8,4 +8,4 @@ experiments:
       spike times: [722.775]
   stepcurrent3_-25:
     expected:
-      spike times:  [729.25, 772.475, 816.8, 861.3, 905.9, 950.575, 995.325, 1040.2, 1085.2, 1130.35, 1175.675, 1221.15, 1266.825, 1312.675, 1358.725, 1404.975, 1451.425, 1498.05, 1544.875, 1591.9, 1639.1, 1686.5, 1734.05, 1781.775, 1829.65, 1877.7, 1925.875, 1974.175, 2022.625, 2071.2, 2119.875, 2168.65, 2217.525, 2266.5, 2315.55, 2364.675, 2413.875, 2463.15, 2512.475, 2561.875, 2611.3, 2660.8]
+      spike times:   [729.25, 772.475, 816.8, 861.3, 905.9, 950.575, 995.325, 1040.2, 1085.2, 1130.35, 1175.675, 1221.15, 1266.825, 1312.675, 1358.725, 1404.975, 1451.425, 1498.05, 1544.875, 1591.9, 1639.1, 1686.5, 1734.05, 1781.775, 1829.675, 1877.7, 1925.875, 1974.2, 2022.65, 2071.2, 2119.875, 2168.675, 2217.55, 2266.5, 2315.575, 2364.7, 2413.9, 2463.175, 2512.5, 2561.9, 2611.325, 2660.825]
diff --git a/NMC/NEURON/.test.l23.mep b/NMC/NEURON/.test.l23.mep
@@ -5,5 +5,6 @@ system: Testing L23
 experiments:
   stepcurrent3_0:
     expected:
-      spike times:  [748.975, 1103.425, 1548.975, 1986.2, 2419.525]
+      spike times: [748.975, 1103.475, 1549.025, 1986.275, 2419.625]
+
 
diff --git a/NMC/NEURON/.test.l23nbc.mep b/NMC/NEURON/.test.l23nbc.mep
@@ -5,4 +5,4 @@ system: Testing L23nbc
 experiments:
   stepcurrent3_0:
     expected:
-      spike times:  [741.8, 793.55, 846.75, 899.875, 952.8, 1005.55, 1058.15, 1110.625, 1163.0, 1215.275, 1267.525, 1319.75, 1371.95, 1424.15, 1476.375, 1528.625, 1580.9, 1633.2, 1685.55, 1737.975, 1790.425, 1842.925, 1895.5, 1948.125, 2000.8, 2053.55, 2106.325, 2159.175, 2212.05, 2265.0, 2318.0, 2371.025, 2424.1, 2477.225, 2530.375, 2583.575, 2636.8, 2690.05]
+      spike times:  [741.8, 793.55, 846.75, 899.875, 952.8, 1005.575, 1058.15, 1110.625, 1163.0, 1215.275, 1267.525, 1319.75, 1371.95, 1424.15, 1476.375, 1528.625, 1580.9, 1633.2, 1685.575, 1737.975, 1790.425, 1842.95, 1895.5, 1948.125, 2000.8, 2053.55, 2106.325, 2159.175, 2212.075, 2265.0, 2318.0, 2371.025, 2424.1, 2477.225, 2530.375, 2583.575, 2636.8, 2690.075]
diff --git a/NMC/NEURON/.test.l5.mep b/NMC/NEURON/.test.l5.mep
@@ -5,6 +5,6 @@ system: Testing L5
 experiments:
   stepcurrent3_0:
     expected:
-      spike times: [743.25, 827.2, 994.45, 1157.2, 1314.675, 1468.375, 1619.3, 1768.225, 1915.675, 2062.0, 2207.5, 2352.375, 2496.775, 2640.825]
+      spike times: [743.25, 827.225, 994.5, 1157.25, 1314.75, 1468.45, 1619.4, 1768.325, 1915.775, 2062.1, 2207.625, 2352.5, 2496.925, 2641.0]
 
 
diff --git a/NMC/NEURON/.test.lbc.mep b/NMC/NEURON/.test.lbc.mep
@@ -5,4 +5,4 @@ system: Testing L1
 experiments:
   stepcurrent3_0:
     expected:
-      spike times:  [708.025, 727.35, 748.625, 769.9, 791.15, 812.35, 833.475, 854.55, 875.575, 896.55, 917.475, 938.35, 959.175, 979.975, 1000.725, 1021.45, 1042.15, 1062.825, 1083.475, 1104.1, 1124.725, 1145.325, 1165.9, 1186.475, 1207.05, 1227.6, 1248.15, 1268.7, 1289.25, 1309.775, 1330.325, 1350.875, 1371.425, 1391.975, 1412.55, 1433.1, 1453.675, 1474.25, 1494.85, 1515.45, 1536.05, 1556.675, 1577.3, 1597.925, 1618.6, 1639.25, 1659.925, 1680.6, 1701.3, 1722.025, 1742.75, 1763.475, 1784.225, 1804.975, 1825.75, 1846.55, 1867.35, 1888.15, 1908.975, 1929.8, 1950.65, 1971.525, 1992.375, 2013.275, 2034.15, 2055.05, 2075.975, 2096.9, 2117.825, 2138.775, 2159.725, 2180.7, 2201.675, 2222.65, 2243.65, 2264.65, 2285.65, 2306.675, 2327.7, 2348.725, 2369.75, 2390.8, 2411.85, 2432.925, 2454.0, 2475.075, 2496.15, 2517.225, 2538.325, 2559.425, 2580.525, 2601.65, 2622.75, 2643.875, 2665.0, 2686.125]
+      spike times:  [708.025, 727.35, 748.625, 769.9, 791.15, 812.35, 833.475, 854.55, 875.575, 896.55, 917.475, 938.35, 959.175, 979.975, 1000.725, 1021.45, 1042.15, 1062.825, 1083.475, 1104.1, 1124.725, 1145.325, 1165.9, 1186.475, 1207.05, 1227.6, 1248.15, 1268.7, 1289.25, 1309.775, 1330.325, 1350.875, 1371.425, 1391.975, 1412.55, 1433.1, 1453.675, 1474.25, 1494.85, 1515.45, 1536.05, 1556.675, 1577.3, 1597.95, 1618.6, 1639.25, 1659.925, 1680.625, 1701.325, 1722.025, 1742.75, 1763.475, 1784.225, 1805.0, 1825.775, 1846.55, 1867.35, 1888.175, 1908.975, 1929.825, 1950.675, 1971.525, 1992.4, 2013.275, 2034.175, 2055.075, 2075.975, 2096.9, 2117.85, 2138.775, 2159.75, 2180.7, 2201.675, 2222.65, 2243.65, 2264.65, 2285.65, 2306.675, 2327.7, 2348.725, 2369.775, 2390.825, 2411.875, 2432.95, 2454.0, 2475.075, 2496.175, 2517.25, 2538.35, 2559.45, 2580.55, 2601.65, 2622.775, 2643.9, 2665.025, 2686.15]
diff --git a/NMC/NeuroML2/.test.jnmlnrn.omt b/NMC/NeuroML2/.test.jnmlnrn.omt
@@ -15,4 +15,4 @@ experiments:
         spike detection: 
           method: threshold
           threshold: 0
-        tolerance: 0.0005985537921566877
+        tolerance: 0.0006036478669835772
diff --git a/NMC/NeuroML2/.test.l1.jnmlnetpyne.omt b/NMC/NeuroML2/.test.l1.jnmlnetpyne.omt
@@ -14,4 +14,4 @@ experiments:
         spike detection: 
           method: threshold
           threshold: -25
-        tolerance: 0.0015033072760072157
+        tolerance: 0.0015032931515599657
diff --git a/NMC/NeuroML2/.test.l1.jnmlnrn.omt b/NMC/NeuroML2/.test.l1.jnmlnrn.omt
@@ -14,4 +14,4 @@ experiments:
         spike detection: 
           method: threshold
           threshold: -25
-        tolerance: 0.001017383996107481
+        tolerance: 0.001033455104787366
diff --git a/NMC/NeuroML2/.test.l23.jnmlnetpyne.omt b/NMC/NeuroML2/.test.l23.jnmlnetpyne.omt
@@ -14,4 +14,4 @@ experiments:
         spike detection: 
           method: threshold
           threshold: 0
-        tolerance: 0.009919302342401917
+        tolerance: 0.00996022110864283
diff --git a/NMC/NeuroML2/.test.l23.jnmlnrn.omt b/NMC/NeuroML2/.test.l23.jnmlnrn.omt
@@ -14,4 +14,4 @@ experiments:
         spike detection: 
           method: threshold
           threshold: 0
-        tolerance: 0.015695229435529662
+        tolerance: 0.015704912951387096
diff --git a/NMC/NeuroML2/.test.l23nbc.jnmlnetpyne.omt b/NMC/NeuroML2/.test.l23nbc.jnmlnetpyne.omt
@@ -14,4 +14,4 @@ experiments:
         spike detection: 
           method: threshold
           threshold: 0
-        tolerance: 0.0007707224901794812
+        tolerance: 0.0007653348339899934
diff --git a/NMC/NeuroML2/.test.l23nbc.jnmlnrn.omt b/NMC/NeuroML2/.test.l23nbc.jnmlnrn.omt
@@ -14,4 +14,4 @@ experiments:
         spike detection: 
           method: threshold
           threshold: 0
-        tolerance: 0.0017948363937593842
+        tolerance: 0.0018102898520911278
diff --git a/NMC/NeuroML2/.test.l5.jnmlnrn.omt b/NMC/NeuroML2/.test.l5.jnmlnrn.omt
@@ -14,4 +14,4 @@ experiments:
         spike detection: 
           method: threshold
           threshold: 0
-        tolerance: 0.010905682883189981
+        tolerance: 0.010895494131011015
diff --git a/NMC/NeuroML2/.test.lbc.jnmlnrn.omt b/NMC/NeuroML2/.test.lbc.jnmlnrn.omt
@@ -14,4 +14,4 @@ experiments:
         spike detection: 
           method: threshold
           threshold: 0
-        tolerance: 0.0020661733910371733
+        tolerance: 0.0020661541611600924