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jchiquet committed Sep 10, 2024
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111 changes: 53 additions & 58 deletions DESCRIPTION
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Expand Up @@ -2,71 +2,65 @@ Package: PLNmodels
Title: Poisson Lognormal Models
Version: 1.2.1
Authors@R: c(
person("Julien", "Chiquet", , "[email protected]", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-3629-3429")),
person("Mahendra", "Mariadassou", , "[email protected]", role = "aut",
comment = c(ORCID = "0000-0003-2986-354X")),
person("Stéphane", "Robin", , "[email protected]", role = "aut"),
person("François", "Gindraud", , "[email protected]", role = "aut"),
person("Julie", "Aubert", , "[email protected]", role = "ctb"),
person("Bastien", "Batardière", , "[email protected]", role = "ctb"),
person("Giovanni", "Poggiato", , "[email protected]", role = "ctb"),
person("Cole", "Trapnell", , "[email protected]", role = "ctb"),
person("Maddy", "Duran", , "[email protected]", role = "ctb")
person("Julien", "Chiquet", role = c("aut", "cre"), email = "[email protected]",
comment = c(ORCID = "0000-0002-3629-3429")),
person("Mahendra", "Mariadassou", role = "aut", email = "[email protected]",
comment = c(ORCID = "0000-0003-2986-354X")),
person("Stéphane", "Robin", role ="aut", email = "[email protected]"),
person("François", "Gindraud", role = "aut", email = "[email protected]"),
person("Julie", "Aubert", role = "ctb", email = "[email protected]"),
person("Bastien", "Batardière", role = "ctb", email = "[email protected]"),
person("Giovanni", "Poggiato", role = "ctb", email = "[email protected]"),
person("Cole", "Trapnell", role = "ctb", email = "[email protected]"),
person("Maddy", "Duran", role = "ctb", email = "[email protected]")
)
Description: The Poisson-lognormal model and variants (Chiquet,
Mariadassou and Robin, 2021 <doi:10.3389/fevo.2021.588292>) can be
used for a variety of multivariate problems when count data are at
play, including principal component analysis for count data,
discriminant analysis, model-based clustering and network inference.
Implements variational algorithms to fit such models accompanied with
a set of functions for visualization and diagnostic.
License: GPL (>= 3)
Description: The Poisson-lognormal model and variants (Chiquet, Mariadassou and Robin,
2021 <doi:10.3389/fevo.2021.588292>) can be used for
a variety of multivariate problems when count data are at play, including
principal component analysis for count data, discriminant analysis, model-based clustering and
network inference. Implements variational algorithms to fit such models accompanied with a set of
functions for visualization and diagnostic.
URL: https://pln-team.github.io/PLNmodels/
BugReports: https://github.com/pln-team/PLNmodels/issues
Depends:
R (>= 3.6)
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: R (>= 3.6)
LazyData: true
biocViews:
Imports:
cli,
corrplot,
dplyr,
future,
future.apply,
ggplot2,
glassoFast,
grid,
gridExtra,
igraph,
magrittr,
MASS,
Matrix,
methods,
nloptr,
pscl,
purrr,
R6,
Rcpp,
rlang,
stats,
tidyr,
torch
methods,
stats,
MASS,
future,
future.apply,
R6,
glassoFast,
pscl,
Matrix,
Rcpp,
nloptr,
igraph,
grid,
gridExtra,
dplyr,
tidyr,
purrr,
ggplot2,
corrplot,
magrittr,
torch,
rlang
Suggests:
factoextra,
knitr,
rmarkdown,
testthat
LinkingTo:
nloptr,
Rcpp,
RcppArmadillo
VignetteBuilder:
knitr
biocViews:
Encoding: UTF-8
Language: en-US
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
testthat,
pkgdown,
spelling,
factoextra
LinkingTo: Rcpp, RcppArmadillo, nloptr
VignetteBuilder: knitr
Collate:
'PLNfit-class.R'
'PLN.R'
Expand Down Expand Up @@ -108,3 +102,4 @@ Collate:
'utils-zipln.R'
'utils.R'
'zzz.R'
Language: en-US

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