Merge pull request #65 from PNNL-CompBio/sanger_data #167

	# name: CI

	# on:
	# push:
	# branches:
	# - JJ_hcmi_branch

	# jobs:
	# build:
	# runs-on: ubuntu-20.04
	# steps:
	# - name: Checkout code
	# uses: actions/checkout@v2

	# - name: Set up Python for GitHub
	# if: github.event_name != 'push' \|\| github.repository != 'owner/repo'
	# uses: actions/setup-python@v2
	# with:
	# python-version: 3.11

	# - name: Install dependencies
	# run: \|
	# python -m pip install --upgrade pip
	# if [ -f requirements.txt ]; then pip install -r requirements.txt; fi

	# - name: Data Generation and Push (mutations)
	# run: \|
	# echo "Mutations Processing"
	# python hcmi/getHCMIData.py -m hcmi/mutations_manifest_gdc.txt -t mutations -o mutations_hcmi.csv

	# - name: Data Generation and Push (copy number)
	# run: \|
	# echo "Copy number Processing"
	# python hcmi/getHCMIData.py -m hcmi/copy_number_manifest_gdc.txt -t copy_number -o copy_number_hcmi.csv

	# - name: Data Generation and Push (transcriptomics)
	# run: \|
	# echo "Transcriptomics processing"
	# python hcmi/getHCMIData.py -m hcmi/transcriptomics_manifest_gdc.txt -t transcriptomics -o transcriptomics_hcmi.csv

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