updated hcmi build

PNNL-CompBio · Jun 19, 2024 · 68fd184 · 68fd184
1 parent 73deec5
commit 68fd184
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diff --git a/build/docker/Dockerfile.hcmi b/build/docker/Dockerfile.hcmi
@@ -11,7 +11,3 @@ COPY build/hcmi/hcmi_cancer_types.csv ./
 
 RUN pip install --no-cache-dir -r requirements.txt
 
-# CMD python 01-createHCMISamplesFile.py && \
-#     python 02-getHCMIData.py -m full_manifest.txt -t transcriptomics -o hcmi_transcriptomics.csv && \
-#     python 02-getHCMIData.py -m full_manifest.txt -M full_manifest_files -t copy_number -o hcmi_copy_number.csv && \
-#     python 02-getHCMIData.py -m full_manifest.txt -M full_manifest_files -t mutations -o hcmi_mutations.csv
diff --git a/build/hcmi/requirements.txt b/build/hcmi/requirements.txt
@@ -1,4 +1,4 @@
-pandas==1.5.3
+pandas==2.2
 wget==3.2
 requests
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