Sanger data and docker images for cell line and cptac data #61
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also adding new samples.
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Change dtype "somatic_mutation" to "mutations". This will make it write to cptac_mutations.csv as specified by the schema.
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Split the samples file generation out to getCPTACSamples.py.
This will allow for the docker.cptac to be run twice, once for samples generation and once for data generation.
Also I think we should name the docker files as "dockerfile.dataname" instead of docker.dataname. I can also make these changes when I merge my branch in after this though.
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Once these changes are made, this PR should be ready to merge. Afterwhich, I'll merge my in progress branches (package_dev branch and builder_branch) to main - just to get everything up to date.
not sure what happened
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I think i got all the changes covered.... |
Sanger data and docker images for cell line and cptac data
Sanger data and docker images for cell line and cptac data
Sanger data and docker images for cell line and cptac data
Sanger data and docker images for cell line and cptac data
Sanger data and docker images for cell line and cptac data
Sanger data and docker images for cell line and cptac data
Sanger data and docker images for cell line and cptac data
Sanger data and docker images for cell line and cptac data
This is a big one, so @jjacobson95 can you please review before merging?