remove dodging from stirring, small updateS

.github/workflows/custopize.yaml

@@ -34,7 +34,7 @@ jobs:
       run: |
         mkdir -p build
         cd build
-        wget https://downloads.raspberrypi.com/raspios_lite_armhf/images/raspios_lite_armhf-2024-10-28/2024-10-22-raspios-bookworm-armhf-lite.img.xz -q -O input.img.xz
+        wget https://downloads.raspberrypi.com/raspios_lite_armhf/images/raspios_lite_armhf-2024-11-19/2024-11-19-raspios-bookworm-armhf-lite.img.xz -q -O input.img.xz
         unxz -f input.img.xz
     - name: "📝 Prepare release"
       run: |

workspace/scripts/06-install-pioreactor.sh

@@ -93,7 +93,7 @@ if [ "$LEADER" == "1" ]; then
     sudo apt-get install sshpass
     sudo -u $USERNAME cp /files/pioreactor/config.example.ini $PIO_DIR/config.ini
 
-    sudo -U $USERNAME mkdir -p $PIO_DIR/exportable_datasets
+    sudo -u $USERNAME mkdir -p $PIO_DIR/exportable_datasets
     sudo -u $USERNAME cp /files/pioreactor/exportable_datasets/*.yaml $PIO_DIR/exportable_datasets/
 
 

workspace/scripts/files/bash/install_pioreactor_plugin.sh

@@ -63,7 +63,7 @@ function download_and_check_if_leader_only {
 
 
 if [ -n "$source" ]; then
-    sudo pip3 install --force-reinstall --no-index "$source"
+    sudo pip3 install --force-reinstall "$source"
 else
     if download_and_check_if_leader_only $clean_plugin_name_with_dashes; then
         if [ "$am_i_leader" = true ]; then
@@ -95,6 +95,11 @@ if [ "$am_i_leader" = true ]; then
         rsync -a "$install_folder/ui/contrib/" /home/pioreactor/.pioreactor/plugins/ui/contrib/
     fi
 
+    # merge datasets contribs
+    if [ -d "$install_folder/exportable_datasets/" ]; then
+        rsync -a "$install_folder/exportable_datasets/" /home/pioreactor/.pioreactor/plugins/exportable_datasets/
+    fi
+
     # broadcast to cluster, don't crap out if we can't sync to a worker.
     pios sync-configs --shared || :
 fi

workspace/scripts/files/bash/uninstall_pioreactor_plugin.sh

@@ -22,8 +22,10 @@ fi
 
 
 if [ "$leader_hostname" == "$(hostname)" ]; then
-    # delete yamls from pioreactorui
+    # delete yamls from ui
     (cd "$install_folder"/ui/contrib/ && find ./ -type f) | awk '{print "/home/pioreactor/.pioreactor/plugins/ui/contrib/"$1}' | xargs rm
+    # delete yamls from datasets
+    (cd "$install_folder"/exportable_datasets/ && find ./ -type f) | awk '{print "/home/pioreactor/.pioreactor/plugins/exportable_datasetss/"$1}' | xargs rm
 
     # TODO: remove sections from config.ini
     # this is complicated because sometimes we edit sections, instead of adding full sections. Ex: we edit [PWM] in relay plugin.

workspace/scripts/files/pioreactor/config.example.ini

@@ -25,9 +25,7 @@ initial_duty_cycle=30
 pwm_hz=200
 use_rpm=1
 duration_between_updates_seconds=23
-post_delay_duration=0.25
-pre_delay_duration=2.0
-enable_dodging_od=False
+
 
 [od_reading.config]
 # how many optical density measurements should be published per second? Recommended maximum is 1.
@@ -90,14 +88,15 @@ console_log_level=DEBUG
 # See docs: https://docs.pioreactor.com/user-guide/create-cluster
 leader_hostname=
 
-# something like: leadername.local or an IPv4 address
+# something like: leadername.local or a static IPv4 address
 leader_address=
 
 [cluster.addresses]
-# You can add (static) IPv4 addresses here for other Pioreactors in the cluster. This will bypass mDNS. Example:
+# You can add static IPv4 addresses here for other Pioreactors in the cluster. This will bypass mDNS. Example:
 # pio01_address=10.42.0.1
 # pio02_address=10.42.0.3
 # The leader's address is automatically added.
+# If addresses aren't present, mDNS will be used -> query for <hostname>.local on the network.
 
 
 [mqtt]

workspace/scripts/files/pioreactor/exportable_datasets/00_pioreactor_unit_activity_data.yaml

@@ -1,7 +1,7 @@
 dataset_name: pioreactor_unit_activity_data
 default_order_by: timestamp
 description: This dataset includes most of your experiment data, including the time
-  series of OD metrics, temperature, stirring rates, LED updates, and dosings.
+  series of OD metrics, temperature, stirring rates, LED updates, and dosings. See also "Pioreactor unit activity data roll-up" for a rolled-up version of this dataset.
 display_name: Pioreactor unit activity data (recommended)
 has_experiment: true
 has_unit: true

workspace/scripts/files/pioreactor/exportable_datasets/24_pioreactor_unit_activity_data_rollup.yaml

@@ -7,5 +7,5 @@ table: pioreactor_unit_activity_data_rollup
 timestamp_columns:
 - timestamp
 description: This dataset is a rolled-up version of Pioreactor unit activity data (above) aggregated to the minute level. This is useful for reducing the size of the exported dataset.
-display_name: Pioreactor unit activity data roll-up (recommended)
+display_name: Pioreactor unit activity data roll-up
 always_partition_by_unit: true