added blastn added second path in reload_devlopment

blast/app.py

@@ -78,6 +78,49 @@ async def run_blastp(request: Request):
     except subprocess.CalledProcessError as e:
         raise HTTPException(status_code=400, detail=f"Command failed: {e.stderr}")
 
+
+@app.post("/blastn")
+async def run_blastn(request: Request):
+    data = await request.json()
+
+    print(f" Received request to run blastn with data: {data}")
+
+    query_filename = f"in.fasta"
+    result_filename = f"out.out"
+
+    # Clear or create result file
+    open(result_filename, 'w').close()
+
+    # Create the fasta file from the query string
+    create_fasta_files_from_seq(data['query'], query_filename)
+
+    try:
+        command = [
+            "blastn",
+            '-query', query_filename,
+            '-db', data['db'],
+            '-evalue', str(data['evalue']),
+            '-outfmt', str(data['outfmt']),
+            '-num_threads', str(data['num_threads']),
+            '-out', result_filename,
+            '-max_target_seqs', str(data['max_target_seqs'])
+        ]
+
+        result = subprocess.run(
+            command, 
+            capture_output=True, 
+            check=True,
+            text=True
+        )
+
+        with open(result_filename, 'r') as file:
+            result_data = file.read()
+
+        return {"result": result_data}
+
+    except subprocess.CalledProcessError as e:
+        raise HTTPException(status_code=400, detail=f"Command failed: {e.stderr}")
+
 
 if __name__ == "__main__":
     import uvicorn

blast/reload_development.sh

@@ -1,4 +1,4 @@
 sudo docker stop blast
 sudo docker remove blast
 sudo docker build --no-cache -t blast_image .
-sudo docker run --name blast --volume /home/ala/BA/mydb:/blast/db -p 6001:6001 blast_image
+sudo docker run --name blast --volume /home/ala/BA/mydb:/blast/db --volume /mnt/databases:/blast/db/custom -p 6001:6001 blast_image