added pairwise aligner #114

	name: Integration Tests (MySQL)

	on: [push]

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.10", "3.11"]
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install psycopg2
	pip install -e .
	- name: Setup Database
	run: \|
	sdrdm-db \
	--root-obj ProteinInfo \
	--model-path https://github.com/PyEED/pyeed.git \
	--env-file .github/scripts/env.toml
	- name: Run example
	run: \|
	python .github/scripts/example.py
	echo "Done"
	services:
	mysql:
	image: mysql:5.7
	env:
	MYSQL_DATABASE: 'db'
	MYSQL_USER: 'user'
	MYSQL_PASSWORD: 'user'
	MYSQL_ROOT_PASSWORD: 'root'
	ports:
	- '3306:3306'
	options: --health-cmd "mysqladmin ping" --health-interval 10s --health-timeout 5s --health-retries 10

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