Merge pull request #1093 from SPAAM-community/Neumann2023

Neumann2023
SPAAM-community · Jul 28, 2023 · 5d87ba7 · 5d87ba7
2 parents b010cfd + 0ea943f
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -33,6 +33,7 @@ and this project follows to [Calendar Versioning](https://calver.org/).
 
 - Swali 2023 10.1038/s41467-023-38393-w (added by @DianaSpurite)
 - Clavel 2023 10.1016/j.isci.2023.106787 (added by @DianaSpurite)
+- Neumann 2023 10.1553/archaeologia107 (added by @DianaSpurite)
 
 #### Ancient Metagenome: Environmental
 

diff --git a/...entsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv b/...entsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv
@@ -2699,3 +2699,9 @@ Clavel2023	2023	10.1016/j.isci.2023.106787	SQ8833	ENA	PRJEB59233	ERS14555642	SQ8
 Clavel2023	2023	10.1016/j.isci.2023.106787	SQ8833	ENA	PRJEB59233	ERS14555642	SQ8833t_Ages_2_8661_lr9_i9_SN1	double	AccuPrime Pfx DNA	half-udg	Illumina MiniSeq	SINGLE	Targeted-Capture	982592	ERR10822340	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/040/ERR10822340/ERR10822340.fastq.gz	d51c58587e885ae6c9bf6d75c22e1f84	37659096
 Clavel2023	2023	10.1016/j.isci.2023.106787	SQ8962	ENA	PRJEB59233	ERS14555651	SQ8962t_Ages_2_8664_lr14_i16_SN1	double	AccuPrime Pfx DNA	half-udg	Illumina MiniSeq	PAIRED	Targeted-Capture	119192	ERR10822697	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/097/ERR10822697/ERR10822697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/097/ERR10822697/ERR10822697_2.fastq.gz	b66d7d13d0fa54eed12e5ea31fceb088;14bfea91d45a0163f5a997e0a4dc451b	3059098;3151326
 Clavel2023	2023	10.1016/j.isci.2023.106787	SQ8962	ENA	PRJEB59233	ERS14555651	SQ8962t_Ages_2_8664_lr14_i16_SN1	double	AccuPrime Pfx DNA	half-udg	Illumina MiniSeq	SINGLE	Targeted-Capture	1876918	ERR10822349	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/049/ERR10822349/ERR10822349.fastq.gz	a0c5603cf22e0520d8be016a6bd459aa	69267755
+Neumann2023	2023	10.1553/archaeologia107	DSH025.YP	ENA	PRJEB61070	ERS15547238	DSH025.A0201.YP1.1	single	AccuPrime Pfx DNA	half-udg	Illumina HiSeq 4000	SINGLE	Targeted-Capture	9470273	ERR11479454	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/054/ERR11479454/ERR11479454.fastq.gz	8ab24f98f3896da32012ef63fde3403f	279725487
+Neumann2023	2023	10.1553/archaeologia107	DSH008.YP	ENA	PRJEB61070	ERS15547237	DSH008.A0101.YP1.1	single	AccuPrime Pfx DNA	none	Illumina HiSeq 4000	SINGLE	Targeted-Capture	18186757	ERR11479451	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/051/ERR11479451/ERR11479451.fastq.gz	d8f2f2fd8d62e02ff8a716fea9d18ad1	577912772
+Neumann2023	2023	10.1553/archaeologia107	DSH025.YP	ENA	PRJEB61070	ERS15547238	DSH025.A0101.YP1.1	single	AccuPrime Pfx DNA	none	Illumina HiSeq 4000	SINGLE	Targeted-Capture	20942952	ERR11479453	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/053/ERR11479453/ERR11479453.fastq.gz	178729c1ff7150afcaded359e62ed960	651275896
+Neumann2023	2023	10.1553/archaeologia107	DSH008.YP	ENA	PRJEB61070	ERS15547237	DSH008.A0201.YP1.1	single	AccuPrime Pfx DNA	half-udg	Illumina HiSeq 4000	SINGLE	Targeted-Capture	6850253	ERR11479452	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/052/ERR11479452/ERR11479452.fastq.gz	869fdf1366e7bceba885863135667f7d	205976513
+Neumann2023	2023	10.1553/archaeologia107	DSH008.SG	ENA	PRJEB61070	ERS15547235	DSH008.A0101.SG1.1	single	AccuPrime Pfx DNA	none	Illumina HiSeq 4000	SINGLE	WGS	3973592	ERR11479449	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/049/ERR11479449/ERR11479449.fastq.gz	6cf53899d806b5373b9846c9cffbebc7	124500605
+Neumann2023	2023	10.1553/archaeologia107	DSH025.SG	ENA	PRJEB61070	ERS15547236	DSH025.A0101.SG1.1	single	AccuPrime Pfx DNA	none	Illumina HiSeq 4000	SINGLE	WGS	4901176	ERR11479450	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/050/ERR11479450/ERR11479450.fastq.gz	999057c65a6ca3edeef32cbb714645ab	143481817
diff --git a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv
@@ -595,4 +595,5 @@ Clavel2023	2023	10.1016/j.isci.2023.106787	Lariey, Puy-Saint-Pierre, Hautes-Alpe
 Clavel2023	2023	10.1016/j.isci.2023.106787	Maladrerie Saint-Lazare, Beauvais	49.415	2.101	France	SQ8723	Homo sapiens	400	10.1016/j.isci.2023.106787	bacteria	Yersinia pestis	tooth	chromosome	ENA	raw	PRJEB59233	ERS14555652,ERS14555653,ERS14555654
 Clavel2023	2023	10.1016/j.isci.2023.106787	Maladrerie Saint-Lazare, Beauvais	49.415	2.101	France	SQ8833	Homo sapiens	400	10.1016/j.isci.2023.106787	bacteria	Yersinia pestis	tooth	chromosome	ENA	raw	PRJEB59233	ERS14555642
 Clavel2023	2023	10.1016/j.isci.2023.106787	Maladrerie Saint-Lazare, Beauvais	49.415	2.101	France	SQ8962	Homo sapiens	400	10.1016/j.isci.2023.106787	bacteria	Yersinia pestis	tooth	chromosome	ENA	raw	PRJEB59233	ERS14555651
-
+Neumann2023	2023	10.1553/archaeologia107	Drasenhofen	48.758	16.651	Austria	DSH008	Homo sapiens	3900	10.1553/archaeologia107	bacteria	Yersinia pestis	tooth	chromosome	ENA	raw	PRJEB61070	ERS15547237,ERS15547235
+Neumann2023	2023	10.1553/archaeologia107	Drasenhofen	48.758	16.651	Austria	DSH025	Homo sapiens	3900	10.1553/archaeologia107	bacteria	Yersinia pestis	tooth	chromosome	ENA	raw	PRJEB61070	ERS15547238,ERS15547236