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Neumann2023 #1093

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Neumann2023 #1093

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Update ancientsinglegenome-hostassociated_samples.tsv
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -33,6 +33,7 @@ and this project follows to [Calendar Versioning](https://calver.org/).

- Swali 2023 10.1038/s41467-023-38393-w (added by @DianaSpurite)
- Clavel 2023 10.1016/j.isci.2023.106787 (added by @DianaSpurite)
- Neumann 2023 10.1553/archaeologia107 (added by @DianaSpurite)

#### Ancient Metagenome: Environmental

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6 changes: 6 additions & 0 deletions ...entsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv
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Expand Up @@ -2699,3 +2699,9 @@ Clavel2023 2023 10.1016/j.isci.2023.106787 SQ8833 ENA PRJEB59233 ERS14555642 SQ8
Clavel2023 2023 10.1016/j.isci.2023.106787 SQ8833 ENA PRJEB59233 ERS14555642 SQ8833t_Ages_2_8661_lr9_i9_SN1 double AccuPrime Pfx DNA half-udg Illumina MiniSeq SINGLE Targeted-Capture 982592 ERR10822340 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/040/ERR10822340/ERR10822340.fastq.gz d51c58587e885ae6c9bf6d75c22e1f84 37659096
Clavel2023 2023 10.1016/j.isci.2023.106787 SQ8962 ENA PRJEB59233 ERS14555651 SQ8962t_Ages_2_8664_lr14_i16_SN1 double AccuPrime Pfx DNA half-udg Illumina MiniSeq PAIRED Targeted-Capture 119192 ERR10822697 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/097/ERR10822697/ERR10822697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/097/ERR10822697/ERR10822697_2.fastq.gz b66d7d13d0fa54eed12e5ea31fceb088;14bfea91d45a0163f5a997e0a4dc451b 3059098;3151326
Clavel2023 2023 10.1016/j.isci.2023.106787 SQ8962 ENA PRJEB59233 ERS14555651 SQ8962t_Ages_2_8664_lr14_i16_SN1 double AccuPrime Pfx DNA half-udg Illumina MiniSeq SINGLE Targeted-Capture 1876918 ERR10822349 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/049/ERR10822349/ERR10822349.fastq.gz a0c5603cf22e0520d8be016a6bd459aa 69267755
Neumann2023 2023 10.1553/archaeologia107 DSH025.YP ENA PRJEB61070 ERS15547238 DSH025.A0201.YP1.1 single AccuPrime Pfx DNA half-udg Illumina HiSeq 4000 SINGLE Targeted-Capture 9470273 ERR11479454 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/054/ERR11479454/ERR11479454.fastq.gz 8ab24f98f3896da32012ef63fde3403f 279725487
Neumann2023 2023 10.1553/archaeologia107 DSH008.YP ENA PRJEB61070 ERS15547237 DSH008.A0101.YP1.1 single AccuPrime Pfx DNA none Illumina HiSeq 4000 SINGLE Targeted-Capture 18186757 ERR11479451 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/051/ERR11479451/ERR11479451.fastq.gz d8f2f2fd8d62e02ff8a716fea9d18ad1 577912772
Neumann2023 2023 10.1553/archaeologia107 DSH025.YP ENA PRJEB61070 ERS15547238 DSH025.A0101.YP1.1 single AccuPrime Pfx DNA none Illumina HiSeq 4000 SINGLE Targeted-Capture 20942952 ERR11479453 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/053/ERR11479453/ERR11479453.fastq.gz 178729c1ff7150afcaded359e62ed960 651275896
Neumann2023 2023 10.1553/archaeologia107 DSH008.YP ENA PRJEB61070 ERS15547237 DSH008.A0201.YP1.1 single AccuPrime Pfx DNA half-udg Illumina HiSeq 4000 SINGLE Targeted-Capture 6850253 ERR11479452 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/052/ERR11479452/ERR11479452.fastq.gz 869fdf1366e7bceba885863135667f7d 205976513
Neumann2023 2023 10.1553/archaeologia107 DSH008.SG ENA PRJEB61070 ERS15547235 DSH008.A0101.SG1.1 single AccuPrime Pfx DNA none Illumina HiSeq 4000 SINGLE WGS 3973592 ERR11479449 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/049/ERR11479449/ERR11479449.fastq.gz 6cf53899d806b5373b9846c9cffbebc7 124500605
Neumann2023 2023 10.1553/archaeologia107 DSH025.SG ENA PRJEB61070 ERS15547236 DSH025.A0101.SG1.1 single AccuPrime Pfx DNA none Illumina HiSeq 4000 SINGLE WGS 4901176 ERR11479450 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/050/ERR11479450/ERR11479450.fastq.gz 999057c65a6ca3edeef32cbb714645ab 143481817
3 changes: 2 additions & 1 deletion ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv
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Expand Up @@ -595,4 +595,5 @@ Clavel2023 2023 10.1016/j.isci.2023.106787 Lariey, Puy-Saint-Pierre, Hautes-Alpe
Clavel2023 2023 10.1016/j.isci.2023.106787 Maladrerie Saint-Lazare, Beauvais 49.415 2.101 France SQ8723 Homo sapiens 400 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS14555652,ERS14555653,ERS14555654
Clavel2023 2023 10.1016/j.isci.2023.106787 Maladrerie Saint-Lazare, Beauvais 49.415 2.101 France SQ8833 Homo sapiens 400 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS14555642
Clavel2023 2023 10.1016/j.isci.2023.106787 Maladrerie Saint-Lazare, Beauvais 49.415 2.101 France SQ8962 Homo sapiens 400 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS14555651

Neumann2023 2023 10.1553/archaeologia107 Drasenhofen 48.758 16.651 Austria DSH008 Homo sapiens 3900 10.1553/archaeologia107 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB61070 ERS15547237,ERS15547235
Neumann2023 2023 10.1553/archaeologia107 Drasenhofen 48.758 16.651 Austria DSH025 Homo sapiens 3900 10.1553/archaeologia107 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB61070 ERS15547238,ERS15547236