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Neumann2023 #1093

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Update ancientsinglegenome-hostassociated_samples.tsv
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -32,6 +32,7 @@ and this project follows to [Calendar Versioning](https://calver.org/).
#### Ancient Single Genome: Host Associated

- Swali 2023 10.1038/s41467-023-38393-w (added by @DianaSpurite)
- Neumann 2023 10.1553/archaeologia107 (added by @DianaSpurite)

#### Ancient Metagenome: Environmental

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4 changes: 4 additions & 0 deletions ...entsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv
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Expand Up @@ -2301,3 +2301,7 @@ Swali2023 2023 10.1038/s41467-023-38393-w C10098 ENA PRJEB61230 ERS14891342 SKO7
Swali2023 2023 10.1038/s41467-023-38393-w C10098 ENA PRJEB61230 ERS14891342 SKO3305A4 single AccuPrime Pfx DNA none unspecified SINGLE WGS 756209056 ERR11262431 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/031/ERR11262431/ERR11262431.fastq.gz 0341ba5f2e31cb6b1b9adb85db84b2d0 21198299666
Swali2023 2023 10.1038/s41467-023-38393-w C10098 ENA PRJEB61230 ERS14891343 SWA3304A26 single AccuPrime Pfx DNA none Illumina NovaSeq 6000 SINGLE Targeted-Capture 95147891 ERR11262438 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/038/ERR11262438/ERR11262438.fastq.gz cd15d4f78840490886a804d090781b5b 2781054839
Swali2023 2023 10.1038/s41467-023-38393-w C10928 ENA PRJEB61230 ERS14909714 SKO719A1330 single AccuPrime Pfx DNA none unspecified SINGLE WGS 1655114 ERR11262425 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/025/ERR11262425/ERR11262425.fastq.gz 113798f9c11a7f7af20b824b13ec7bb3 47631779
Neumann2023 2023 10.1553/archaeologia107 DSH025.YP ENA PRJEB61070 ERS15547238 DSH025.A0201.YP1.1 double Unknown full-udg Illumina HiSeq 4000 SINGLE Targeted-Capture 9470273 ERR11479454 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/054/ERR11479454/ERR11479454.fastq.gz 8ab24f98f3896da32012ef63fde3403f 279725487
Neumann2023 2023 10.1553/archaeologia107 DSH008.YP ENA PRJEB61070 ERS15547237 DSH008.A0101.YP1.1 double Unknown full-udg Illumina HiSeq 4000 SINGLE Targeted-Capture 18186757 ERR11479451 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/051/ERR11479451/ERR11479451.fastq.gz d8f2f2fd8d62e02ff8a716fea9d18ad1 577912772
Neumann2023 2023 10.1553/archaeologia107 DSH025.YP ENA PRJEB61070 ERS15547238 DSH025.A0101.YP1.1 double Unknown full-udg Illumina HiSeq 4000 SINGLE Targeted-Capture 20942952 ERR11479453 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/053/ERR11479453/ERR11479453.fastq.gz 178729c1ff7150afcaded359e62ed960 651275896
Neumann2023 2023 10.1553/archaeologia107 DSH008.YP ENA PRJEB61070 ERS15547237 DSH008.A0201.YP1.1 double Unknown full-udg Illumina HiSeq 4000 SINGLE Targeted-Capture 6850253 ERR11479452 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/052/ERR11479452/ERR11479452.fastq.gz 869fdf1366e7bceba885863135667f7d 205976513
2 changes: 2 additions & 0 deletions ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv
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Expand Up @@ -585,4 +585,6 @@ Sarhan2023 2023 10.1186/s12915-022-01509-7 Barfüsserkirche/Franciscan church of
Swali2023 2023 10.1038/s41467-023-38393-w Charterhouse Warren, Mendip Hills, Somerset 51.299 -2.715 United Kingdom C10091 Homo sapiens 4000 10.1038/s41467-023-38393-w bacteria Yersinia pestis tooth chromosome ENA raw PRJEB61230 ERS14891340
Swali2023 2023 10.1038/s41467-023-38393-w Charterhouse Warren, Mendip Hills, Somerset 51.299 -2.715 United Kingdom C10098 Homo sapiens 4000 10.1038/s41467-023-38393-w bacteria Yersinia pestis tooth chromosome ENA raw PRJEB61230 ERS14891341,ERS14891342
Swali2023 2023 10.1038/s41467-023-38393-w Levens Deer Park ring cairn, Leven, Cumbria 54.268 -2.761 United Kingdom C10928 Homo sapiens 3900 10.1038/s41467-023-38393-w bacteria Yersinia pestis tooth chromosome ENA raw PRJEB61230 ERS14909714,ERS14891343
Neumann2023 2023 10.1553/archaeologia107 Cemetery of Drasenhofen 48.755 16.643 Austria DSH008 Homo sapiens 4000 10.1553/archaeologia107 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB61070 ERS15547237,ERS15547235
Neumann2023 2023 10.1553/archaeologia107 Cemetery of Drasenhofen 48.755 16.643 Austria DSH025 Homo sapiens 4000 10.1553/archaeologia107 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB61070 ERS15547238,ERS15547236

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