Fix 131

.Rbuildignore

@@ -8,3 +8,6 @@ cran-comments.md
 ^LICENSE\.md$
 ^CRAN-RELEASE$
 ^CRAN-SUBMISSION$
+^safetyCharts\.Rcheck$
+^safetyCharts.*\.tar\.gz$
+^safetyCharts.*\.tgz$

.gitignore

@@ -40,3 +40,6 @@ vignettes/*.pdf
 
 .DS_Store
 .Rproj.user
+safetyCharts.Rcheck/
+safetyCharts*.tar.gz
+safetyCharts*.tgz

R/meta.R

@@ -179,4 +179,24 @@
 #' 
 #' @source Created for this package
 
-"meta_ex"
+"meta_ex"
+
+#' Metadata data frame containing information about the data mapping used to configure safetyGraphics for the nepExplorer Chart. One record per unique data mapping
+#'
+#' @format A data frame with X rows and 10 columns
+#' \describe{
+#'    \item{domain}{Data domain}
+#'    \item{text_key}{Text key indicating the setting name. \code{'--'} delimiter indicates a field level data mapping}
+#'    \item{col_key}{Key for the column mapping}
+#'    \item{field_key}{Key for the field mapping (if any)}
+#'    \item{type}{type of mapping - "field" or "column"}
+#'    \item{label}{Label}
+#'    \item{description}{Description}
+#'    \item{multiple}{Mapping supports multiple columns/fields }
+#'    \item{standard_adam}{Default values for the ADaM data standard}
+#'    \item{standard_sdtm}{Default values for the SDTM data standard}
+#' }    
+#' 
+#' @source Created for this package
+
+"meta_nepExplorer"

data-raw/makeMeta.R

@@ -42,3 +42,8 @@ usethis::use_data(meta_ex, overwrite = TRUE)
 #hepExplorer
 meta_hepExplorer<-read_csv("data-raw/meta_hepExplorer.csv")[]
 usethis::use_data(meta_hepExplorer, overwrite = TRUE)
+
+#Chart-level metadata
+#nepExplorer
+meta_nepExplorer<-read_csv("data-raw/meta_nepExplorer.csv")[]
+usethis::use_data(meta_nepExplorer, overwrite = TRUE)

data-raw/meta_nepExplorer.csv

@@ -0,0 +1,11 @@
+text_key,domain,col_key,field_key,type,label,description,multiple,standard_adam,standard_sdtm
+measure_values--CREAT,labs,measure_col,CREAT,field,Creatinine value,Value used for Creatinine in the specified measure column,FALSE,Creatinine (umol/L),Creatinine
+measure_values--ALB,labs,measure_col,ALB,field,Albumin value,Value used for Albumin in the specified measure column,FALSE,Albumin (g/L),Albumin
+measure_values--BUN,labs,measure_col,BUN,field,Creatinine value,Value used for Blood Urea Nitrogen in the specified measure column,FALSE,Blood Urea Nitrogen (mmol/L),Blood Urea Nitrogen
+measure_values--CA,labs,measure_col,CA,field,Calcium value,Value used for Calcium in the specified measure column,FALSE,Calcium (mmol/L),Calcium
+measure_values--CL,labs,measure_col,CL,field,Chloride value,Value used for Chloride in the specified measure column,FALSE,Chloride (mmol/L),Chloride
+measure_values--PHOS,labs,measure_col,PHOS,field,Phosphate value,Value used for Phosphate in the specified measure column,FALSE,Phosphate (mmol/L),Phosphate
+measure_values--K,labs,measure_col,K,field,Potassium value,Value used for Potassium in the specified measure column,FALSE,Potassium (mmol/L),Potassium
+measure_values--SODIUM,labs,measure_col,SODIUM,field,Sodium value,Value used for Sodium in the specified measure column,FALSE,Sodium (mmol/L),Sodium
+measure_values--DIABP,vitals,measure_col,DIABP,field,Diastolic Blood Pressure value,Value used for Diastolic Blood Pressure in the specified measure column,FALSE,Diastolic Blood Pressure (mmHg),Diastolic Blood Pressure
+measure_values--SYSBP,vitals,measure_col,SYSBP,field,Systolic Blood Pressure value,Value used for Systolic Blood Pressure in the specified measure column,FALSE,Systolic Blood Pressure (mmHg),Systolic Blood Pressure

inst/config/nepExplorer.yaml

@@ -0,0 +1,27 @@
+env: safetyGraphics
+label: Nephrotoxicity Explorer
+type: htmlwidget
+package: safetyCharts
+domain: 
+  - labs
+dataSpec:
+  labs:
+    - id_col
+    - visit_col
+    - visitn_col
+    - studyday_col
+    - measure_col
+    - value_col
+export: true
+workflow:
+  widget: nepExplorer
+  ui: nepexplorer_ui
+  server: nepexplorer_server
+links:
+  Clinical Users Guide (pdf): 
+  Homepage: https://github.com/SafetyGraphics/nep-explorer
+  Wiki: https://github.com/SafetyGraphics/nep-explorer/wiki
+  Issues: https://github.com/SafetyGraphics/nep-explorer/issues
+  Demo: https://safetygraphics.github.io/nep-explorer/test-page/
+  safetyCharts: https://github.com/SafetyGraphics/safetycharts
+